View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1930_high_7 (Length: 404)
Name: NF1930_high_7
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1930_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 107 - 360
Target Start/End: Original strand, 1774639 - 1774892
Alignment:
| Q |
107 |
tatatgctttattataatactctcatctttcaattttttaaatttatcttccatatatcatatttaatcaaggataatttagtaaagttacttataattt |
206 |
Q |
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| T |
1774639 |
tatatgctttattataatactctcatctttcaattttttaaatttatcttccatatatcatatttaatcaaggataatttagcaaagttacttataattt |
1774738 |
T |
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| Q |
207 |
catttatttttctaacaacactgattacatattcttagaagatctttattataattggacgaaaaacttatttaagtcaattctttttcctttgtctaca |
306 |
Q |
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| T |
1774739 |
catttttttttctaacaacactgattacatattcttagaagatctttattataattgaacgaaaaacttatttaagtcaattctttttcctttgtctata |
1774838 |
T |
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| Q |
307 |
gagatcgttattataactaggtataatctttctaggtcctaatgataaatatcc |
360 |
Q |
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| T |
1774839 |
gagatcgtttctgtaactaggtgtgatctttctaggtcctaatgataaatatcc |
1774892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 1774234 - 1774323
Alignment:
| Q |
1 |
cactcattttaaaacagaaggagtaagtcattttaataaaattttatctcaagttattagccattttataattccaatgaatgattaatg |
90 |
Q |
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| T |
1774234 |
cactcattttaaaacggaaggagtaagtcattttaataaaaatttgtctcaagttattagccattttataatcccaatgaatgattaatg |
1774323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 34449454 - 34449371
Alignment:
| Q |
121 |
taatactctcatctttcaattttttaaatttatcttccatatatcatatttaatcaaggataatttagtaaagttacttataatttc |
207 |
Q |
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| T |
34449454 |
taatactctcttctttcaattttttgaatttatcttccatgtacca---ttaatgaagtataagtttataaagttaattataatttc |
34449371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 39837460 - 39837379
Alignment:
| Q |
118 |
ttataatactctcatctttcaattttttaaatttatcttccatatatcatatttaatcaaggataatttagtaaagttacttataa |
203 |
Q |
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| T |
39837460 |
ttataatattctcctatttcaattttttaaatttatcttcc-tatatta---ttaatgaaagataattttgtaaaattacttataa |
39837379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 21040024 - 21040060
Alignment:
| Q |
170 |
ttaatcaaggataatttagtaaagttacttataattt |
206 |
Q |
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| T |
21040024 |
ttaatcaagaataattttgtaaagttacttataattt |
21040060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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