View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1930_high_8 (Length: 402)
Name: NF1930_high_8
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1930_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 48691303 - 48690930
Alignment:
| Q |
19 |
gttagactctcacaacatgacaagctaaagttcaaatcccatcagaaagtggtagcaagtttagtatgtgacatgtctcaaagaatattacctccaatgg |
118 |
Q |
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| T |
48691303 |
gttagaatctcacaacatgacaagttaaagttcaaatcccatcagaaagtggtagcaagtttagtatgtgacatgtctcaaagaatattacctccaatgg |
48691204 |
T |
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| Q |
119 |
aaagaatttatggnnnnnnnnnnnnnnnnngagaatgtagaagataactctacgaatttatgagagataaaacgcagaacaatttcattataatgaagaa |
218 |
Q |
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| T |
48691203 |
aaagaatttatggaaaaccaaaaaacaaaagagaatgtagaagataactctacgaatttatgtgagataaaacgcagaacaatttcattataatgaagaa |
48691104 |
T |
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| Q |
219 |
caatacaagataagtctatgttttcccttgcaatacctggtgagaaccagtcacaagaatccccaagtctgtctcacaatctccctaattttctatccac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
48691103 |
caatacaagataagtctatgttttcccttgcaatacctggtgagaaccagttacaagaatccccaagtctgtctcacaatctccctcattttcaatccac |
48691004 |
T |
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| Q |
319 |
aatgtagaagtttaaattaaaatggctcacactttggttcgtcataattttcttacatatagagataccctatg |
392 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48691003 |
aatgtagaagtttaaattaaaatggctcagactttggttcgtcgtaattttcttacatatagagataccctatg |
48690930 |
T |
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