View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1930_low_1 (Length: 549)
Name: NF1930_low_1
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1930_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 5e-79; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 138 - 416
Target Start/End: Original strand, 2016167 - 2016457
Alignment:
| Q |
138 |
aaaaagtgaatttatcgtttataatagtgaataaagagtgtatgtcattccttcaataactaaaaacagccgccaatactgtttattgatnnnnnnnnnn |
237 |
Q |
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| T |
2016167 |
aaaaagtgaatttattgcttataatagtgaacaaagagtatatgtcattccttcaacaactaaaaacagccgccaatactgtttattgattaaaaaaaaa |
2016266 |
T |
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| Q |
238 |
tataa-----------ggcaccttatactaataccaatgatgatatgatactgcatgcaaaacaatgatgataaaatactttattatgcaaccaattatt |
326 |
Q |
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| T |
2016267 |
aaaaaaaaaaaaaaaaggcaccttatactaatactaacgatgatatgatactacatgcaaaacaatgatgataaaatactttattatgcaaccaattatt |
2016366 |
T |
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| Q |
327 |
aatgataatatcataccttaattaaggtaattctac-aannnnnnncacgtcaagtttttccatttagaaaataaataacacgcaaacgta |
416 |
Q |
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| T |
2016367 |
aatgataatatcataccttaattaaggtaattctacaaaaaaaattcacgtcaagtttttccatttataaaataaataacacgcaaacgta |
2016457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 2008771 - 2008950
Alignment:
| Q |
11 |
acattacatggcatcacgaaaaagtccagtgtaagatctatcagaatgaatctaataaaaagaatgtgaagtgtaagacaattgtcatgataaatatgct |
110 |
Q |
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| T |
2008771 |
acattacatggcatcaccaaaaagttaagtgtaagacctataagaatgcatctaataaaaagaatgtgaagtgtaagacaattgtcatggtaaatat--- |
2008867 |
T |
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| Q |
111 |
gaccatatattacatttcaataaatctaaaaagtgaatttatcgtttataatagtgaataaagagtgtatgtcattccttcaataactaaaaacag |
206 |
Q |
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| T |
2008868 |
-------------atttcaataaatctaaaaagtgaatttatcgcttataatagtgaacaaagagtgtatgtcattccttcaacaacaaaaaacag |
2008950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 436 - 532
Target Start/End: Original strand, 2016534 - 2016630
Alignment:
| Q |
436 |
tacgtttttatgagatagccaaaataatgtttaaaaaagtgataaatctagttcatgaatccagatattcattgaaggtcaaagcatattgagttgt |
532 |
Q |
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| T |
2016534 |
tacgtttttatgagatagccaaaataatgtttaaaaaagtgataaatctggttcatgaatccagatattcatggaaggtcaaagcatattgagttgt |
2016630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 2008994 - 2009083
Alignment:
| Q |
315 |
caaccaattattaatgataatatcataccttaattaaggtaattctacaannnnnnncacgtcaagtttttccatttagaaaataaataa |
404 |
Q |
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| T |
2008994 |
caaccaattatttatgataatatcgtaccttgattacgctaattctacaatttttgtcacgtcaagtttttctatttagaaaataaataa |
2009083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 439 - 527
Target Start/End: Original strand, 2009256 - 2009344
Alignment:
| Q |
439 |
gtttttatgagatagccaaaataatgtttaaaaaagtgataaatctagttcatgaatccagatattcattgaaggtcaaagcatattga |
527 |
Q |
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| T |
2009256 |
gtttttgtgagatagccaaaatagcttttaaaaaagtgataaatttggttcatgaattcagttgttcatggaaggtcaaaacatattga |
2009344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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