View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1930_low_11 (Length: 248)

Name: NF1930_low_11
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1930_low_11
NF1930_low_11
[»] chr7 (4 HSPs)
chr7 (1-232)||(45024338-45024567)
chr7 (1-146)||(48259957-48260100)
chr7 (57-142)||(26201950-26202033)
chr7 (1-48)||(41816140-41816187)
[»] chr1 (1 HSPs)
chr1 (4-144)||(8249197-8249335)
[»] chr8 (2 HSPs)
chr8 (1-146)||(40918045-40918188)
chr8 (21-140)||(8051128-8051247)
[»] chr3 (5 HSPs)
chr3 (146-230)||(31213485-31213569)
chr3 (4-143)||(9020346-9020485)
chr3 (50-152)||(34706814-34706916)
chr3 (21-138)||(7269222-7269339)
chr3 (21-91)||(45775116-45775186)
[»] chr6 (2 HSPs)
chr6 (24-140)||(5091603-5091719)
chr6 (22-148)||(33857952-33858076)
[»] chr4 (2 HSPs)
chr4 (9-143)||(55960989-55961125)
chr4 (104-145)||(36571530-36571571)
[»] chr5 (1 HSPs)
chr5 (33-140)||(26108935-26109042)
[»] chr2 (2 HSPs)
chr2 (33-140)||(925349-925455)
chr2 (100-140)||(5186258-5186299)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 45024567 - 45024338
Alignment:
Q  1 tggcatggaaaggtttttagtgtgggactcatgtgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgt 100  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||    
T  45024567 tggcatggaaaggtttttagtgtgggacccatgtgtttcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttcttt--cccttgt 45024470  T
Q  101 ctttctctcccctcactatctatccatagaaacaaacacaccctaagtttcttcctccaaacactgttgtcatggaagcagcttttgcttctgctgcgtt 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45024469 ctttttctcccctcactatctatccatagaaacaaacacaccctaagtttcttcctccaaacactgttgtcatggaagcagcttttgcttctgctgcgtt 45024370  T
Q  201 tggcttcatccaaaacttcacattctgccatg 232  Q
    ||||||||||||||||||||||||||||||||    
T  45024369 tggcttcatccaaaacttcacattctgccatg 45024338  T

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Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 48259957 - 48260100
Alignment:
Q  1 tggcatggaaaggtttttagtgtgggactcatgtgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgt 100  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||| |    
T  48259957 tggcattgaaaggtttttagtgtggaactgatgtgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttc--tttccctttt 48260054  T
Q  101 ctttctctcccctcactatctatccatagaaacaaacacaccctaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48260055 ctttctctcccctcactatctatccatagaaacaaacacaccctaa 48260100  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 26201950 - 26202033
Alignment:
Q  57 tttcacttgttccaaaccatgaaaaatgcttctttttctcttgtctttctctcccctcactatctatccatagaaacaaacacacc 142  Q
    ||||||||||||||||| |||||||||| ||||||  |     ||||||||||||||||| |||| |||||||||| |||||||||    
T  26201950 tttcacttgttccaaactatgaaaaatgtttcttt--ccacaatctttctctcccctcacaatctttccatagaaataaacacacc 26202033  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41816187 - 41816140
Alignment:
Q  1 tggcatggaaaggtttttagtgtgggactcatgtgtctcattctttcc 48  Q
    |||||||||| |||||||||||||||||  |||||| |||||||||||    
T  41816187 tggcatggaatggtttttagtgtgggacctatgtgtttcattctttcc 41816140  T

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Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 8249197 - 8249335
Alignment:
Q  4 catggaaaggtttttagtgtgggactcatgtgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgtctt 103  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||  |||| ||||||||    
T  8249197 catggaaaggtttttagtgtgggacccatgtgtctcattttttccttagttagtttcacttgttctaaaccataaaaaatgcttc--tttcccttgtctt 8249294  T
Q  104 tctctcccctcactatctatccatagaaacaaacacaccct 144  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8249295 tctctcccctcactatctatccatagaaacaaacacaccct 8249335  T

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Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 40918045 - 40918188
Alignment:
Q  1 tggcatggaaaggtttttagtgtgggactcatgtgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |||  |||| |||||    
T  40918045 tggcatggaaaggtttttagtgtgggacccatgtgtctcattctttccttaattagtttcccttgttccaaaccatggaaaatgtttc--tttcccttgt 40918142  T
Q  101 ctttctctcccctcactatctatccatagaaacaaacacaccctaa 146  Q
    | ||||||||||||||||||||||||||||||||||||||||||||    
T  40918143 cattctctcccctcactatctatccatagaaacaaacacaccctaa 40918188  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 8051247 - 8051128
Alignment:
Q  21 tgtgggactcatg-tgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgtctttctctcc-cctcacta 118  Q
    |||||||| |||| |||||||||||||  |  || ||||||| ||||||||||||||| ||||| |||||||  | ||||||||||| ||| ||||||||    
T  8051247 tgtgggacccatgatgtctcattcttttttgggtgagtttcatttgttccaaaccatggaaaatacttcttt--cccttgtctttctttcctcctcacta 8051150  T
Q  119 tctatccatagaaacaaacaca 140  Q
    ||||||||| ||||||||||||    
T  8051149 tctatccatggaaacaaacaca 8051128  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 31213485 - 31213569
Alignment:
Q  146 agtttcttcctccaaacactgttgtcatggaagcagcttttgcttctgctgcgtttggcttcatccaaaacttcacattctgcca 230  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31213485 agtttcttcctccaaacactgctgtcatggaagcagcttttgcttctgctgcgtttggcttcatccaaaacttcacattctgcca 31213569  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 9020485 - 9020346
Alignment:
Q  4 catggaaaggtttttagtgtgggactcatg-tgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgtct 102  Q
    |||| |||||||||| |||||| |  |||| | |||||||||||| |||||| |||||||||||||||||||||| |||||| |||  |||| |||||||    
T  9020485 catgaaaaggtttttggtgtggaagccatggtatctcattctttcattagttggtttcacttgttccaaaccatggaaaatgtttc--tttcccttgtct 9020388  T
Q  103 ttctct-cccctcactatctatccatagaaacaaacacaccc 143  Q
    |||||| ||||||||||||| |||||||||||||||||||||    
T  9020387 ttctctccccctcactatctttccatagaaacaaacacaccc 9020346  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 34706814 - 34706916
Alignment:
Q  50 tagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgtctttctctccc-ctcactatctatccatagaaacaaacacaccc-taag 147  Q
    |||||||||| |||| |||||||||||| |||||| ||||||  | |||||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  34706814 tagttagttttacttcttccaaaccatggaaaatgtttcttt--cccttgtctttctctccctctcactatctttccatagaaacaaacacacccttaag 34706911  T
Q  148 tttct 152  Q
    |||||    
T  34706912 tttct 34706916  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 7269339 - 7269222
Alignment:
Q  21 tgtgggactcatg-tgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgtctttctctcc-cctcacta 118  Q
    |||||||| |||| ||||||| ||||||||| || ||||||||||||||||||||||| ||||  ||||  ||||  |||||||||| ||| ||||||||    
T  7269339 tgtgggacccatggtgtctcaatctttccttggtgagtttcacttgttccaaaccatggaaaacacttc--tttccattgtctttctttcctcctcacta 7269242  T
Q  119 tctatccatagaaacaaaca 138  Q
    ||||||||| ||||||||||    
T  7269241 tctatccatggaaacaaaca 7269222  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 45775116 - 45775186
Alignment:
Q  21 tgtgggactcatgtgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttcttt 91  Q
    |||||||| ||||||||||||||||||||| |  | ||||||||||||||||| ||| |||||| ||||||    
T  45775116 tgtgggacccatgtgtctcattctttcctttgccactttcacttgttccaaactatggaaaatgtttcttt 45775186  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 5091719 - 5091603
Alignment:
Q  24 gggactcatgtgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgtctttctct-cccctcactatcta 122  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||| ||||| || |||||||||| ||||||| |||||     
T  5091719 gggacccatgtgtctcattctttcctttggtagtttcacttgttccaaacgatggaaaatgcttc-ttttccctcgtctttctctgcccctcagtatctt 5091621  T
Q  123 tccatagaaacaaacaca 140  Q
    |||| |||||||||||||    
T  5091620 tccacagaaacaaacaca 5091603  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 33858076 - 33857952
Alignment:
Q  22 gtgggactcatgtgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgtctttctctcccctcactatct 121  Q
    |||||| |||||||||||||||||| ||| | || |||| |||||||||||| ||  |||||| ||||||  |     ||||||||||||||||| ||||    
T  33858076 gtgggattcatgtgtctcattcttttctttgctactttcccttgttccaaactatagaaaatgtttcttt--ccacaatctttctctcccctcacaatct 33857979  T
Q  122 atccatagaaacaaacacaccctaagt 148  Q
     ||| ||||||||||||||||||||||    
T  33857978 ttccgtagaaacaaacacaccctaagt 33857952  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 55961125 - 55960989
Alignment:
Q  9 aaaggtttttagtgtgggactcatgtgtctcattct---ttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgtctttc 105  Q
    |||||||||||| ||||||| |||||||||||||||   || |||||||||||| | |||||||||||||| ||||||||||  |||||| |||||||||    
T  55961125 aaaggtttttagcgtgggacccatgtgtctcattctaattttcttagttagttttaattgttccaaaccataaaaaatgctt-attttct-ttgtctttc 55961028  T
Q  106 tct-cccctcactatctatccatagaaacaaacacaccc 143  Q
    ||| ||||||||||||| ||||| |||| ||||||||||    
T  55961027 tctccccctcactatctttccatggaaataaacacaccc 55960989  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 36571530 - 36571571
Alignment:
Q  104 tctctcccctcactatctatccatagaaacaaacacacccta 145  Q
    |||| |||||||| ||||||||||||||||||||||| ||||    
T  36571530 tctcccccctcacaatctatccatagaaacaaacacaaccta 36571571  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 26108935 - 26109042
Alignment:
Q  33 gtgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgtctttctctcccc-tcactatctatccatagaa 131  Q
    |||||||||| |||||||  | |||||||||  ||||||| ||||||||||||||| ||||| |||| | |||||||||| ||||||||| |||||  ||    
T  26108935 gtgtctcattatttcctttatcagtttcactaattccaaatcatgaaaaatgcttc-ttttcccttgcccttctctccccttcactatctttccatgaaa 26109033  T
Q  132 acaaacaca 140  Q
    |||||||||    
T  26109034 acaaacaca 26109042  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 925455 - 925349
Alignment:
Q  33 gtgtctcattctttccttagttagtttcacttgttccaaaccatgaaaaatgcttctttttctcttgtctttctctccc-ctcactatctatccatagaa 131  Q
    |||||||||||||||||| || | ||||||||||||||||| ||| ||| || ||||||  | ||  |||||||||||  || || |||| |||||||||    
T  925455 gtgtctcattctttcctttgtcactttcacttgttccaaactatggaaagtgtttcttt--ccctaatctttctctcctgcttacaatctttccatagaa 925358  T
Q  132 acaaacaca 140  Q
    |||||||||    
T  925357 acaaacaca 925349  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 5186258 - 5186299
Alignment:
Q  100 tctttctctcccc-tcactatctatccatagaaacaaacaca 140  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  5186258 tctttctctccccctcacaatctatccatagaaacaaacaca 5186299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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