View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1930_low_17 (Length: 237)
Name: NF1930_low_17
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1930_low_17 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 45025069 - 45024853
Alignment:
| Q |
4 |
gttcaggctaagcaagtttgcgaaatgtttgtcttaatagaataaataatttttataaaattgtctgcccttaaatttatgcgccaaaaaattgtgccag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
45025069 |
gttcaggctaagcaagtttgcgaaatgtttgtcttaatagaataaataatttttatataattgtctgcccttaaatttatgtgccaaaaaattatgccag |
45024970 |
T |
|
| Q |
104 |
gacaaattgagnnnnnnnattgaagttcttttcattccagtgtttggagtgatgatgagttggtaattgtcggaagaattgatgataggtgaagaattaa |
203 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45024969 |
gacaaattgagtttttttattgaagttcttttcattccagt-----------------gttggtaattgtcggaagaattgatgataggtgaataattaa |
45024887 |
T |
|
| Q |
204 |
ttgagctcctacaacacgtaacaaaagctgaatc |
237 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
45024886 |
ttgagctcctacaacacctaacaaaagctgaatc |
45024853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 31213398 - 31213480
Alignment:
| Q |
156 |
tgatgagttggtaattgtcggaagaattgatgataggtgaa-gaattaattgagctcctacaacacgtaacaaaagctgaatc |
237 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
31213398 |
tgatgagttggtaattgtcagaagaattgatgataggtgaaggaattaatggagctcctacaacacctaacaaaagctgaatc |
31213480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University