View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1930_low_18 (Length: 228)
Name: NF1930_low_18
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1930_low_18 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9393668 - 9393441
Alignment:
| Q |
1 |
gcaggtgattaaggaccatgggaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttagttaggaaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9393668 |
gcaggtgattaaggaccatgggaatctagttgacaaaaagagaattttcaaatctgatgtaaaagatgaaaatcctttagattgtttagttaggaaaata |
9393569 |
T |
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| Q |
101 |
aacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattataatgttcagttttgaaatatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9393568 |
aacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattataatgttcagttttgaaatacgt |
9393469 |
T |
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| Q |
201 |
tgattttgtttactacaggctgcaaaaa |
228 |
Q |
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| T |
9393468 |
tgattttgtttactacaggctgcaaaaa |
9393441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31943300 - 31943071
Alignment:
| Q |
1 |
gcaggtgattaaggaccatgggaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttagttaggaaaata |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31943300 |
gcaggtgattaaggaccatggtaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttagttaggaaagta |
31943201 |
T |
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| Q |
101 |
aacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattataatgttc--agttttgaaatat |
198 |
Q |
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| T |
31943200 |
aacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttctaattttgcattataatgttcagagttttgaaatat |
31943101 |
T |
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| Q |
199 |
gttgattttgtttactacaggctgcaaaaa |
228 |
Q |
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| T |
31943100 |
gttgattttgtttactacaggctgcaaaaa |
31943071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 1341488 - 1341271
Alignment:
| Q |
1 |
gcaggtgattaaggaccatgggaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttagttaggaaaata |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1341488 |
gcaggtgattaaggaccatgggaatctggttgacaaaaagaggattttcatatctgatgtaaaagatgaaaatcctttagattgtttagttaggaaagtt |
1341389 |
T |
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| Q |
101 |
aacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattataatgttc--agttttgaaatat |
198 |
Q |
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| T |
1341388 |
aacattgtacaaatttctcctgatgtaagtgcttcatgtag---ttcttttgttgtataa---------ttgcattataatgttcagagttttgaaatat |
1341301 |
T |
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| Q |
199 |
gttgattttgtttactacaggctgcaaaaa |
228 |
Q |
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||||||||| | ||||||||||||||||| |
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| T |
1341300 |
gttgattttatacactacaggctgcaaaaa |
1341271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 46630593 - 46630367
Alignment:
| Q |
1 |
gcaggtgattaaggaccatgggaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttagttaggaaaata |
100 |
Q |
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||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
46630593 |
gcaggtgatcaaggaccacgggaatctgtttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttagttaagaaagta |
46630494 |
T |
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| Q |
101 |
aacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattataatgtt--cagttttgaaatat |
198 |
Q |
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||||||| ||||||||||||| ||||||||||||||| ||| ||||||| || |||| || ||||||||||||||||| ||||||||||||| |
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| T |
46630493 |
ggaattgtacggatttctcctgatgcaagtgctttgtgtag---ttcctttgttgcatgacttatacttttgcattataatgtttggagttttgaaatat |
46630397 |
T |
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| Q |
199 |
gttgattttgtttactacaggctgcaaaaa |
228 |
Q |
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| T |
46630396 |
gttgattttgtatactaaaggctgcaaaaa |
46630367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 5643562 - 5643391
Alignment:
| Q |
1 |
gcaggtgattaaggaccatgggaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttagttaggaaaata |
100 |
Q |
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|||||| || ||| |||||||| |||| |||| |||| |||||||||||||||||||| ||||||||||| ||| | ||||||||||||| |||| | |
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| T |
5643562 |
gcaggttatcaagaaccatggggatctcattgatgaaaaaaggattttcaaatctgatgtgaaagatgaaaaccctcttgattgtttagttaagaaagtt |
5643463 |
T |
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| Q |
101 |
aacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattat |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||| |
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| T |
5643462 |
aacattgtacaaatttctcctgatgtaagtgctttgtg------ttcttttgttgtgtaatttataattttgcattat |
5643391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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