View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1930_low_3 (Length: 483)
Name: NF1930_low_3
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1930_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 47 - 468
Target Start/End: Original strand, 24352539 - 24352960
Alignment:
| Q |
47 |
catacgcatgagtcaagaaccgaacctctgatcacgtgtataagggggacaaatcctttatttgaacgaatttactaagctttaattaccattctattga |
146 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24352539 |
catacacatgaatcaagaaccgaacctctgatcacttatataagggggacaaatcctttacttgaaagaatttactaagctttaattaccattctattga |
24352638 |
T |
|
| Q |
147 |
aaatacccattaatattcacctttgtttctgcttagcaaaaatcaaccttgaagaaattcaaggtgcaggccttccagtccagagtgccgacctaagatc |
246 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24352639 |
acatacccattaatattcacctttgtttctgcttagcaaaaatcaaccttgaagaaattcaaggtgcaggccttccagtccagagtgccgacctaagatc |
24352738 |
T |
|
| Q |
247 |
tctagtaggtccaatattaacatattcttaaaaacacaatgcccgtttggattggttggaatttttatttttaagaaaaaattgaattggtttgagtcag |
346 |
Q |
| |
|
||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24352739 |
tctagtaggtccattattaacctactcttaaaaacacaatgcccgtttggattggttggaatttttatttttaagaaaaaattgaattggtttgagtcag |
24352838 |
T |
|
| Q |
347 |
acatgttttatctcagaaatatgtttaaaacgtttgtttgttgtgctgtcaaagccaattctgtttaaaaatgtttagataatatacataccaattgttg |
446 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24352839 |
acatgttttatctctgaaatatgtttaaaacgttagtttgttgtgctgtcaaagccaattctgtttaaaaatgtttagataatatgcataccaattgttg |
24352938 |
T |
|
| Q |
447 |
ctaaattgaaggcatgaatatt |
468 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24352939 |
ttaaattgaaggcatgaatatt |
24352960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 47 - 468
Target Start/End: Original strand, 24310198 - 24310618
Alignment:
| Q |
47 |
catacgcatgagtcaagaaccgaacctctgatcacgtgtataagggggacaaatcctttatttgaacgaatttactaagctttaattaccattctattga |
146 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| | ||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24310198 |
catacacatgaatcaagaaccgaacctctgatcacttatataagggg-acaaatcctttacttgaaagaatttactaagctttaattaccattctattga |
24310296 |
T |
|
| Q |
147 |
aaatacccattaatattcacctttgtttctgcttagcaaaaatcaaccttgaagaaattcaaggtgcaggccttccagtccagagtgccgacctaagatc |
246 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24310297 |
acatacccattaatattcacctttgtttctgcttagcaaaaatcaaccttgaagaaattcaaggtgcaggccttccagtccagagtgccgacctaagatc |
24310396 |
T |
|
| Q |
247 |
tctagtaggtccaatattaacatattcttaaaaacacaatgcccgtttggattggttggaatttttatttttaagaaaaaattgaattggtttgagtcag |
346 |
Q |
| |
|
||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24310397 |
tctagtaggtccattattaacctactcttaaaaacacaatgcccgtttggattggttggaatttttatttttaagaaaaaattgaattggtttgagtcag |
24310496 |
T |
|
| Q |
347 |
acatgttttatctcagaaatatgtttaaaacgtttgtttgttgtgctgtcaaagccaattctgtttaaaaatgtttagataatatacataccaattgttg |
446 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24310497 |
acatgttttatctctgaaatatgtttaaaacgttagtttgttgtgctgtcaaagccaattctgtttaaaaatgtttagataatatgcataccaattgttg |
24310596 |
T |
|
| Q |
447 |
ctaaattgaaggcatgaatatt |
468 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24310597 |
ttaaattgaaggcatgaatatt |
24310618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24310151 - 24310185
Alignment:
| Q |
1 |
ggcaaaaattaatgtgaattctcctctttcaatca |
35 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
24310151 |
ggcataaattaatgtgaattctcctctttcaatca |
24310185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24352491 - 24352525
Alignment:
| Q |
1 |
ggcaaaaattaatgtgaattctcctctttcaatca |
35 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
24352491 |
ggcataaattaatgtgaattctcctctttcaatca |
24352525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University