View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1930_low_4 (Length: 481)
Name: NF1930_low_4
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1930_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 21 - 470
Target Start/End: Complemental strand, 7417084 - 7416635
Alignment:
| Q |
21 |
ggcgccaccgtagaactagccaaatcattcctcaaaacccatgatgctactcttgccggccggcccaaattgtcggctggaaaatacacaacatataact |
120 |
Q |
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| T |
7417084 |
ggcgccaccgtagaactagccaaatcattcctcaaaacccatgatgctactcttgccggccggcccaaattgtcggctggaaaatacacaacatataact |
7416985 |
T |
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| Q |
121 |
attcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattggagttgtttagtgcaaaacgcctcgagtcttacga |
220 |
Q |
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| T |
7416984 |
attcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattggagttgtttagtgcaaaacgcctcgagtcttacga |
7416885 |
T |
|
| Q |
221 |
gtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagaccatctttcaactttgagtcta |
320 |
Q |
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| T |
7416884 |
gtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagaccatctttcaactttgagtcta |
7416785 |
T |
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| Q |
321 |
aatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagtttaagaagatgttggatgagttgt |
420 |
Q |
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| T |
7416784 |
aatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagtttaagaagatgttggatgagttgt |
7416685 |
T |
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| Q |
421 |
ttttacttaatggaattctcaatattggggattttattccttggattcat |
470 |
Q |
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| T |
7416684 |
ttttacttaatggaattctcaatattggggattttattccttggattcat |
7416635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 72 - 470
Target Start/End: Complemental strand, 7426019 - 7425621
Alignment:
| Q |
72 |
cttgccggccggcccaaattgtcggctggaaaatacacaacatataactattcagacataacttggtctcaatatggtccatattggcgtcaagctcgta |
171 |
Q |
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| T |
7426019 |
cttgctgggcggcccaaattctccgctggaaaatatactacttataactactccaacattacttggtcccaatatggcccatattggcaacaagctcgta |
7425920 |
T |
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| Q |
172 |
gaatgtgtctattggagttgtttagtgcaaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattc |
271 |
Q |
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| T |
7425919 |
aaatgtgtctgctagaactgtttagtgtaaaacgccttgagtcttatgagtacatgagaaaacaagagttacatgctttcttgcacgaactatttaattc |
7425820 |
T |
|
| Q |
272 |
aaaaaacaaaacaattttggtgaaagaccatctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgat |
371 |
Q |
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| T |
7425819 |
aaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataagtcgcatggttttgggcaaaaagtatttggagaagagtgaa |
7425720 |
T |
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| Q |
372 |
aatgcagttatttcccctgatgagtttaagaagatgttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattcat |
470 |
Q |
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| T |
7425719 |
aatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgcttaatggggtcctcaatgttggggattttattccttggattcat |
7425621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 99 - 469
Target Start/End: Complemental strand, 7431981 - 7431611
Alignment:
| Q |
99 |
ggaaaatacacaacatataactattcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattggagttgtttagtg |
198 |
Q |
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| T |
7431981 |
ggaaaatacacaacttataactactctaacatcacttggaacccatacggtccatattttcaacaagcccgtaaaatgtttcaaagggaattgtttagtg |
7431882 |
T |
|
| Q |
199 |
caaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaaga |
298 |
Q |
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|||| | ||||||||||| |||||||| |||||| |||| | ||| |||| |||||||||| |||||||||||||| ||||| |||||| |||| || |
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| T |
7431881 |
taaaaagtctcgagtcttatgagtacatgagaaaagaagaattacatatttttctgcataaactcttcaattcaaaaaataaaactattttgttgaagga |
7431782 |
T |
|
| Q |
299 |
ccatctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagttt |
398 |
Q |
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||||||||||||||| ||||| ||| ||||||| || |||||| | ||||| || |||||||| |||| ||| |||| ||||||||||||| |||||| |
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| T |
7431781 |
ccatctttcaacttttagtcttaatattataagccgcatggtgttggggaagaaatacttggagaagagtgaaaatgttattatttcccctgaagagttt |
7431682 |
T |
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| Q |
399 |
aagaagatgttggatgagttgtttttacttaatggaattctcaatattggggattttattccttggattca |
469 |
Q |
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||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
7431681 |
aaggagatgttggatgagttgtttttgcttaatggggtcttcaatattggggattttattccttggattca |
7431611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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