View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1930_low_6 (Length: 441)
Name: NF1930_low_6
Description: NF1930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1930_low_6 |
 | |
|
| [»] scaffold0001 (2 HSPs) |
| | |
|
| [»] scaffold0158 (5 HSPs) |
| | |
|
| [»] scaffold0035 (5 HSPs) |
| | |
|
| [»] scaffold0564 (1 HSPs) |
| | |
|
| [»] scaffold1407 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0001 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 38 - 287
Target Start/End: Original strand, 186209 - 186458
Alignment:
| Q |
38 |
tcacgggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacacgttgt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||| |
|
|
| T |
186209 |
tcacgggttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgttgt |
186308 |
T |
|
| Q |
137 |
taaagaagcttggcctataaataggtccagaaaggaaaagttgggggagaagagtttttaggcaagcattagaaattcacaactgattgtaaccctaagt |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || | | ||||| || |||||| ||||||||||||||||| | | |||||||| ||||||| |
|
|
| T |
186309 |
taaagaagcttggcctataaataggtccagagaggaagagct-gaggagagaagcttttagacaagcattagaaattcatagccgattgtaatcctaagt |
186407 |
T |
|
| Q |
237 |
ttcagtttccttttcattcacagtttgttacaatcgtactgtttcatttca |
287 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
186408 |
ttcagtttccttttcattcacagtttgatacaatcgtactgttttatttca |
186458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 186487 - 186574
Alignment:
| Q |
325 |
ccaaattcagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttc |
412 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||| ||| ||||||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
186487 |
ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcggtttggaatgggtgttc |
186574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 42 - 287
Target Start/End: Complemental strand, 36596 - 36351
Alignment:
| Q |
42 |
gggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacacgttgttaaa |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||| || || ||||||| ||| |
|
|
| T |
36596 |
gggttcgggagaatcagtctgccccacttccaggaacggtttccagttttctctcccactccctccacctgcagaggcacgatcataatacgttgtaaaa |
36497 |
T |
|
| Q |
141 |
gaagcttggcctataaataggtccagaaaggaaaagttgggggagaagagtttttaggcaagcattagaaattcacaactgattgtaaccctaagtttca |
240 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || || || ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
36496 |
gaagcttggcctataaataggtccagagaggaagagctgcgg-agagaagtttttaggcaagcattagaaattcataactgattgtaatcctaagtttca |
36398 |
T |
|
| Q |
241 |
gtttccttttcattcacagtttgttacaatcgtactgtttcatttca |
287 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| |||||| |
|
|
| T |
36397 |
gtttccttttcattcacagtacgatacaatcgtactgttttatttca |
36351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 325 - 439
Target Start/End: Complemental strand, 36313 - 36199
Alignment:
| Q |
325 |
ccaaattcagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttcattcaattggat |
424 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
36313 |
ccaaattcagtcattgttgttctaattccaaaataagctgctgccgtgttatttatttccttgttgctgcggtttggaattggtgttcgttaaattggat |
36214 |
T |
|
| Q |
425 |
tgttgtggttctctg |
439 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
36213 |
tgttgttgttctctg |
36199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 325 - 439
Target Start/End: Complemental strand, 28591 - 28477
Alignment:
| Q |
325 |
ccaaattcagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttcattcaattggat |
424 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
28591 |
ccaaattcagtcattgttgttctaattccaaaataagttgctgccgtgttatttatttccttgttgctgcggtttggaattggtgttcgttaaattggat |
28492 |
T |
|
| Q |
425 |
tgttgtggttctctg |
439 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
28491 |
tgctgttgttctctg |
28477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 31132 - 31020
Alignment:
| Q |
38 |
tcacgggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacacgttgt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||| |
|
|
| T |
31132 |
tcacgggttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctccacctgcagaggcacgatcagaacacattgt |
31033 |
T |
|
| Q |
137 |
taaagaagcttgg |
149 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31032 |
taaagaagcttgg |
31020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 145 - 287
Target Start/End: Complemental strand, 28769 - 28629
Alignment:
| Q |
145 |
cttggcctataaataggtccagaaaggaaaagttgggggagaagagtttttaggcaagcattagaaattcacaactgattgtaaccctaagtttcagttt |
244 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || || ||| ||||||||||||||| |||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
28769 |
cttggcctataaataggtccagagaggaagagctgcgg-agagaagtttttaggcaagctttagaaatgcataactgattgtaatcctaagtttcagttt |
28671 |
T |
|
| Q |
245 |
ccttttcattcacagtttgttacaatcgtactgtttcatttca |
287 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| |||||| |
|
|
| T |
28670 |
ccttttcatttacagttt-atacaatcgtactgttttatttca |
28629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 128; Significance: 5e-66; HSPs: 5)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 38 - 287
Target Start/End: Complemental strand, 97762 - 97509
Alignment:
| Q |
38 |
tcacgggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacacgttgt |
136 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| | |
|
|
| T |
97762 |
tcacgggttcgggagaatcagtcttccccactcccaggaacggtttccagttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttt |
97663 |
T |
|
| Q |
137 |
taaagaagcttggcctataaataggtccagaaaggaaaag---ttgggggagaagagtttttaggcaagcattagaaattcacaactgattgtaacccta |
233 |
Q |
| |
|
||| |||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
97662 |
taagaaagcttggcctataaataggtctagaaaaggaaaggaaaagggggaga--agtttttaggcaagcattagaaattcatagctgattgtaatccta |
97565 |
T |
|
| Q |
234 |
agtttca--gtttccttttcattcacagtttgttacaatcgtactgtttcatttca |
287 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||| ||| |||||| |
|
|
| T |
97564 |
agtttcaagttttccttttcattcacagtttgatacaatcgtactattttatttca |
97509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 87916 - 87816
Alignment:
| Q |
189 |
agtttttaggcaagcattagaaattcacaactgattgtaaccctaagtttca--gtttccttttcattcacagtttgttacaatcgtactgtttcatttc |
286 |
Q |
| |
|
||||||||||||| ||||||||||||| | |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
87916 |
agtttttaggcaaacattagaaattcatagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtactattttatttc |
87817 |
T |
|
| Q |
287 |
a |
287 |
Q |
| |
|
| |
|
|
| T |
87816 |
a |
87816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 88044 - 87950
Alignment:
| Q |
38 |
tcacgggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacac |
131 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
88044 |
tcacgggttcgggagaatcagtcttgcccactcccaggaacggttttcagttttctctcccacttcctccacctgcagaagcacgaccagaacac |
87950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 87780 - 87700
Alignment:
| Q |
332 |
cagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttc |
412 |
Q |
| |
|
||||||| | |||||||||||| || ||||||| |||||||||||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
87780 |
cagtcatcgctgttctaattccgaattaagctgctgccgtgttatttatttctctgttgctgcggtttggaatgggtgttc |
87700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 97473 - 97393
Alignment:
| Q |
332 |
cagtcattgatgttctaattccaaaataagctgatgccgtgttatttatttccttgttgctgcgatttggaattggtgttc |
412 |
Q |
| |
|
||||||| | |||||||||||| || ||||||| || ||||||||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
97473 |
cagtcatcgttgttctaattccgaattaagctgctgtcgtgttatttatttctctgttgctgcggtttggaatgggtgttc |
97393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 18477914 - 18477697
Alignment:
| Q |
42 |
gggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacacgttgttaaa |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| || | |
|
|
| T |
18477914 |
gggttcgggagaatcagtctcccccactcccaggaacggtttccagttttctctcccacttcctccacctgcagaagcacgaccagaacacgttttttac |
18477815 |
T |
|
| Q |
141 |
gaagcttggcctataaataggtccagaaaggaaa--agttgggggagaagagtttttaggcaagcattagaaattcacaactgattgtaaccctaagttt |
238 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||| | || |||||| ||||||||||||||||||||||||| | || ||||||| ||||||||| |
|
|
| T |
18477814 |
gaagcttggcctataaataggtgcagagaagaaaggaaaaaggagagaagtttttttaggcaagcattagaaattcatagcttattgtaatcctaagttt |
18477715 |
T |
|
| Q |
239 |
c-agtttccttttcattc |
255 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
18477714 |
caagtttccttttcattc |
18477697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 38 - 255
Target Start/End: Complemental strand, 18488014 - 18487793
Alignment:
| Q |
38 |
tcacgggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacacgttgt |
136 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| || ||||||||||| || | |
|
|
| T |
18488014 |
tcacgggttcggaagaatcagtctcccccactcccaggaacggtttccagttttctctcccacttcctccacctgcagaagcatgaccagaacacatttt |
18487915 |
T |
|
| Q |
137 |
taaagaagcttggcctataaataggtccagaaaggaaa--agttgggggagaagagtttttaggcaagcattagaaattcacaactgattgtaaccctaa |
234 |
Q |
| |
|
| | |||||||||||||||||||||| |||| | |||| | || |||||| ||||||||||||||||||||||||| | | ||||||| ||||| |
|
|
| T |
18487914 |
ttaggaagcttggcctataaataggtgcagagaagaaaggaaaaaggagagaagtttttttaggcaagcattagaaattcatagcatattgtaatcctaa |
18487815 |
T |
|
| Q |
235 |
gtttc-agtttccttttcattc |
255 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
18487814 |
gtttcaagtttccttttcattc |
18487793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 14223523 - 14223646
Alignment:
| Q |
38 |
tcacgggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacacgttgt |
136 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | | | |||||||||||| |||||||||||||| |||||||| ||| ||||| |||| |||||| |
|
|
| T |
14223523 |
tcacgggttcggaagaagcagtctcccccattatctgaaacggtttccagatttctctcccactcgctccacctgcagaagcacgatcagagcacgtttc |
14223622 |
T |
|
| Q |
137 |
taaagaagcttggcctataaatag |
160 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
14223623 |
caatgaagcttggcctataaatag |
14223646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 14233618 - 14233741
Alignment:
| Q |
38 |
tcacgggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacacgttgt |
136 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | | | |||||||||||| |||||||||||||| |||||||| ||| ||||| |||| |||||| |
|
|
| T |
14233618 |
tcacgggttcggaagaagcagtctcccccattatctgaaacggtttccagatttctctcccactcgctccacctgcagaagcacgatcagagcacgtttc |
14233717 |
T |
|
| Q |
137 |
taaagaagcttggcctataaatag |
160 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
14233718 |
caatgaagcttggcctataaatag |
14233741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 28386079 - 28386202
Alignment:
| Q |
38 |
tcacgggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacacgttgt |
136 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | | | |||||||||||| |||||||||||||| |||||||| ||| ||||| |||| |||||| |
|
|
| T |
28386079 |
tcacgggttcggaagaagcagtctcccccattatctgaaacggtttccagatttctctcccactcgctccacctgcagaagcacgatcagagcacgtttc |
28386178 |
T |
|
| Q |
137 |
taaagaagcttggcctataaatag |
160 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
28386179 |
caatgaagcttggcctataaatag |
28386202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 658 - 535
Alignment:
| Q |
38 |
tcacgggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacctatagagacacgaccagaacacgttgt |
136 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | | | ||||||||||| |||||||||||||| |||||||| ||| ||||| |||| |||||| |
|
|
| T |
658 |
tcacgggttcggaagaagcagtctcccccattatctgaaacggtttccatatttctctcccactcgctccacctgcagaagcacgatcagagcacgtttc |
559 |
T |
|
| Q |
137 |
taaagaagcttggcctataaatag |
160 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
558 |
caatgaagcttggcctataaatag |
535 |
T |
|
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Target: scaffold1407 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 1499 - 1426
Alignment:
| Q |
38 |
tcacgggttcgggagaatcagtctcccccactcccag-aacggtttccagttttctctcccactccctccacct |
110 |
Q |
| |
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| T |
1499 |
tcacgggttcggaagaagcagtctcccccattatctgaaacggttcccagttttctctcccactcgctccacct |
1426 |
T |
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