View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19310_high_2 (Length: 240)
Name: NF19310_high_2
Description: NF19310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19310_high_2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 55 - 236
Target Start/End: Original strand, 15195735 - 15195916
Alignment:
| Q |
55 |
ccttttatgataaagacaccaaaaattaagatccgttctgatgaagaacaactcatcccaactgagagaatattccattttacaaaggagaataccgcga |
154 |
Q |
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| T |
15195735 |
ccttttatgataaatacaccacaaattaagatccgttttgatgaagaacaactcatcccaactgagagaatattccattttacaaaggagaatatcgcga |
15195834 |
T |
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| Q |
155 |
gactcaaattaaaagccaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcacccacctttggcgctc |
236 |
Q |
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| T |
15195835 |
gactcaaattaaaagctaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcacccacctttggcgctc |
15195916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15190699 - 15190758
Alignment:
| Q |
1 |
cctccaacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttcctttt |
60 |
Q |
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| T |
15190699 |
cctccaacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttcctttt |
15190758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 8999417 - 8999290
Alignment:
| Q |
118 |
gagagaatattccattttacaaaggagaataccgcgagactcaaattaaaagccaatatagaagctggcac------caacaaaatatcttccatgcaag |
211 |
Q |
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| T |
8999417 |
gagagaatattccattttactaaggagaatatcacgagactcaaattaaaagcgaacatagaggccggtactagtatcaacaaaatatcttccctgcaag |
8999318 |
T |
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| Q |
212 |
cgctttgcacccacctttggcgctctgtg |
240 |
Q |
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| T |
8999317 |
cgc-ttacactcacctttggcgctctgtg |
8999290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 7629225 - 7629167
Alignment:
| Q |
1 |
cctccaacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttccttt |
59 |
Q |
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| T |
7629225 |
cctccaacatctgaacgttggtttccaaatggtattcaacttcccatacgatttccttt |
7629167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 7606837 - 7606782
Alignment:
| Q |
4 |
ccaacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttccttt |
59 |
Q |
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| T |
7606837 |
ccaacactagagcgttggtttccaaatggtattcaacttcccatacgatttccttt |
7606782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 7655673 - 7655710
Alignment:
| Q |
22 |
tttccaaatggaattcaacgtcccatacgatttccttt |
59 |
Q |
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| T |
7655673 |
tttccaaatggaattcaacgacctatacgatttccttt |
7655710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 8103076 - 8103025
Alignment:
| Q |
5 |
caacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttcc |
56 |
Q |
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| T |
8103076 |
caacacttgaacgttggtttccagatggtattcaatgtcccatacgatttcc |
8103025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 40146913 - 40146961
Alignment:
| Q |
13 |
gaacgtttatttccaaatggaattcaacgtcccatacgatttcctttta |
61 |
Q |
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| T |
40146913 |
gaacgttggtttccaagtggtattcaacatcccatacgatttcctttta |
40146961 |
T |
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