View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19310_low_5 (Length: 209)
Name: NF19310_low_5
Description: NF19310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19310_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 1517171 - 1516981
Alignment:
| Q |
1 |
acttgtgtccacaagatgagccgtagctagcctatatgccgacttcatcaaataagaggcgacaatctcaggataccaagtaatcctannnnnnnnaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1517171 |
acttgtgtccacaagatgagccgtagctagcctatatgccgacttcatcaaataagaggcgacaatctcaggataccaagtaatcctattttttttaact |
1517072 |
T |
|
| Q |
101 |
gggaatatagcaaaatatcattaatattataagccatagtggtatggaacatacctcaaatcacttcaacatgccaagacttggaatggtg |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1517071 |
gggaatatagcaaaatatcattaatattataagccatagtggtatggaacatacctcaaatcacttcaacatgccaagacttggaatggtg |
1516981 |
T |
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Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 2908506 - 2908316
Alignment:
| Q |
1 |
acttgtgtccacaagatgagccgtagctagcctatatgccgacttcatcaaataagaggcgacaatctcaggataccaagtaatcctannnnnnnnaact |
100 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
2908506 |
acttgtgtccacaaaatgagcgataactagcctatatgccgacttcatcgaataagaggtcacaatctcaggataccaagtaatcctatttgctttaact |
2908407 |
T |
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| Q |
101 |
gggaatatagcaaaatatcattaatattataagccatagtggtatggaacatacctcaaatcacttcaacatgccaagacttggaatggtg |
191 |
Q |
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||||||||||| |||| || ||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2908406 |
gggaatatagcgaaatgccaataatattataaaccatagtggtaggaagcatacctcaaatcacttcaacatgccaagccttggaatggtg |
2908316 |
T |
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