View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19311_low_1 (Length: 322)

Name: NF19311_low_1
Description: NF19311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19311_low_1
NF19311_low_1
[»] chr8 (16 HSPs)
chr8 (60-234)||(19377916-19378090)
chr8 (82-233)||(19414610-19414761)
chr8 (82-233)||(19398254-19398405)
chr8 (63-233)||(19501588-19501758)
chr8 (63-234)||(19406371-19406542)
chr8 (82-233)||(19552474-19552625)
chr8 (82-233)||(19580063-19580214)
chr8 (87-233)||(19538182-19538328)
chr8 (82-234)||(19453328-19453480)
chr8 (82-234)||(19527595-19527747)
chr8 (82-228)||(19338442-19338588)
chr8 (90-233)||(19288701-19288844)
chr8 (82-228)||(19356469-19356615)
chr8 (63-214)||(19347229-19347380)
chr8 (94-228)||(19171349-19171483)
chr8 (242-299)||(19501476-19501534)
[»] chr1 (1 HSPs)
chr1 (64-234)||(36312476-36312646)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 60 - 234
Target Start/End: Original strand, 19377916 - 19378090
Alignment:
Q  60 aaagatttggtggattccaataaatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttgg 159  Q
    |||| ||||| |||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  19377916 aaaggtttggcggattctaatgaatcttatgatatcaaagatcttgaagacgattttaagggacatgatataaaagtttttaactttatatcaattttgg 19378015  T
Q  160 aagcaactatggagttttccccagaaaacaaattaggacagggaggctatggacctgtttacaaggtgattttaa 234  Q
    ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |||||    
T  19378016 aagcaactatggacttttcccctgaaaacaagttaggacagggaggctatggacctgtttataaggtgactttaa 19378090  T

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Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 19414610 - 19414761
Alignment:
Q  82 aatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttcccc 181  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  19414610 aatcatatgatatcaaagatcttgaagacgacttcaagggacatgatataaaagtttttaactttacatcaatcttggaagcaactatggaattttcccc 19414709  T
Q  182 agaaaacaaattaggacagggaggctatggacctgtttacaaggtgatttta 233  Q
     |||||||| |||||||||||||| |||||||| ||||| ||||||| ||||    
T  19414710 tgaaaacaagttaggacagggaggttatggacccgtttataaggtgacttta 19414761  T

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Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 19398254 - 19398405
Alignment:
Q  82 aatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttcccc 181  Q
    |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  19398254 aatcatatgatatcaaagatcttgaagatgacttcaagggacatgatataaaagtttttaactttacatcaatcttggaagcaactatggaattttcccc 19398353  T
Q  182 agaaaacaaattaggacagggaggctatggacctgtttacaaggtgatttta 233  Q
     |||||||| |||||||||||||| |||||||| ||||| ||||||| ||||    
T  19398354 tgaaaacaagttaggacagggaggttatggacccgtttataaggtgacttta 19398405  T

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Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 63 - 233
Target Start/End: Complemental strand, 19501758 - 19501588
Alignment:
Q  63 gatttggtggattccaataaatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaag 162  Q
    ||||||| |||||| | | |||| ||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  19501758 gatttggcggattcgactgaatcctataatatcaaagatcttgaagatgacttcaagggacatgatataaaagtttttaactatacatcaattttggaag 19501659  T
Q  163 caactatggagttttccccagaaaacaaattaggacagggaggctatggacctgtttacaaggtgatttta 233  Q
    |||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  19501658 caactatggacttttcacctgaaaacaagttaggacagggaggctatggacctgtttataaggtgacttta 19501588  T

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Target: chr8; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 19406371 - 19406542
Alignment:
Q  63 gatttggtggattccaataaatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaag 162  Q
    ||||||| ||| |||| | |||| |||||| | |||||||||||||  || |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19406371 gatttggcggactccattgaatcctatgatgttaaagatcttgaagctgacttcaagggacatgatataaaagtttttaactttacatcaattttggaag 19406470  T
Q  163 caactatggagttttccccagaaaacaaattaggacagggaggctatggacctgtttacaaggtgattttaa 234  Q
    |||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||| |||||    
T  19406471 caactatggacttttcccctgaaaacaagttaggacagggaggctatggaccagtttataaggtgactttaa 19406542  T

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Target: chr8; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 19552625 - 19552474
Alignment:
Q  82 aatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttcccc 181  Q
    |||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||     
T  19552625 aatcctatgatatcaaagatcttgaagatgacttcaagggacatgatataaaagtttttaactttacatcaatattggaagcaactatggacttttccca 19552526  T
Q  182 agaaaacaaattaggacagggaggctatggacctgtttacaaggtgatttta 233  Q
     |||||||| ||||||||||||||||||||||| ||||| ||||||| ||||    
T  19552525 tgaaaacaagttaggacagggaggctatggacccgtttataaggtgacttta 19552474  T

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Target: chr8; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 19580063 - 19580214
Alignment:
Q  82 aatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttcccc 181  Q
    |||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||     
T  19580063 aatcctatgatatcaaagatcttgaagatgacttcaagggacatgatataaaagtttttaactttacatcaatattggaagcaactatggacttttccca 19580162  T
Q  182 agaaaacaaattaggacagggaggctatggacctgtttacaaggtgatttta 233  Q
     |||||||| ||||||||||||||||||||||| ||||| ||||||| ||||    
T  19580163 tgaaaacaagttaggacagggaggctatggacccgtttataaggtgacttta 19580214  T

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Target: chr8; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 19538328 - 19538182
Alignment:
Q  87 tatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttccccagaaa 186  Q
    ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||    
T  19538328 tatgatatcaaagatcttgaagatgacttcaagggacatgatataaaagtttttaactttgcatcaatcttggaagcaactatggacttttcccctgaaa 19538229  T
Q  187 acaaattaggacagggaggctatggacctgtttacaaggtgatttta 233  Q
    |||| ||||||||||||||||||||||| ||||| ||||||| ||||    
T  19538228 acaagttaggacagggaggctatggacccgtttataaggtgacttta 19538182  T

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Target: chr8; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 19453328 - 19453480
Alignment:
Q  82 aatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttcccc 181  Q
    |||| |||||| | |||||||||||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19453328 aatcctatgatgttaaagatcttgaagctgacttcaagggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcccc 19453427  T
Q  182 agaaaacaaattaggacagggaggctatggacctgtttacaaggtgattttaa 234  Q
     |||||||| |||||||| |||||||||||||| ||||| ||||||| |||||    
T  19453428 tgaaaacaagttaggacaaggaggctatggaccagtttataaggtgactttaa 19453480  T

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Target: chr8; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 82 - 234
Target Start/End: Complemental strand, 19527747 - 19527595
Alignment:
Q  82 aatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttcccc 181  Q
    |||| |||||| | |||||||||||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19527747 aatcctatgatgttaaagatcttgaagctgacttcaagggacatgatataaaagtttttaactttacatcaattttggaagcaactatggacttttcccc 19527648  T
Q  182 agaaaacaaattaggacagggaggctatggacctgtttacaaggtgattttaa 234  Q
     |||||||| |||||||| |||||||||||||| ||||| ||||||| |||||    
T  19527647 tgaaaacaagttaggacaaggaggctatggaccagtttataaggtgactttaa 19527595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 19338442 - 19338588
Alignment:
Q  82 aatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttcccc 181  Q
    |||| ||||||||||||||||||||| | || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |    
T  19338442 aatcctatgatatcaaagatcttgaaaatgacttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactatggatttttcatc 19338541  T
Q  182 agaaaacaaattaggacagggaggctatggacctgtttacaaggtga 228  Q
     |||||||| ||||||||||||||||||||||| ||||| |||||||    
T  19338542 tgaaaacaagttaggacagggaggctatggacccgtttataaggtga 19338588  T

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Target: chr8; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 19288701 - 19288844
Alignment:
Q  90 gatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttccccagaaaaca 189  Q
    |||||||||||||||||||| || |||||||| |||||||||||||||||||||| | |||||||||||||||||||||| || ||||| || |||||||    
T  19288701 gatatcaaagatcttgaagatgacttcaagggacatgatataaaagtttttaactatgcatcaattttggaagcaactattgacttttcacctgaaaaca 19288800  T
Q  190 aattaggacagggaggctatggacctgtttacaaggtgatttta 233  Q
    | |||||||||||||| |||||||||||||| ||||||| ||||    
T  19288801 agttaggacagggaggttatggacctgtttataaggtgacttta 19288844  T

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Target: chr8; HSP #13
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 19356469 - 19356615
Alignment:
Q  82 aatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttcccc 181  Q
    |||| ||||||||||||||||||||| | || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||  |    
T  19356469 aatcctatgatatcaaagatcttgaaaatgacttcaaaggacatgatataaaagtttttaactttacatcaattttggaagcaactttggacttttcatc 19356568  T
Q  182 agaaaacaaattaggacagggaggctatggacctgtttacaaggtga 228  Q
     |||||||| ||||||||||||||||||||||| ||||| |||||||    
T  19356569 tgaaaacaagttaggacagggaggctatggacccgtttataaggtga 19356615  T

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Target: chr8; HSP #14
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 19347229 - 19347380
Alignment:
Q  63 gatttggtggattccaataaatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaag 162  Q
    ||||||| |||||| | | |||| ||| ||||||||||||||||| | || |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  19347229 gatttggcggattcgactgaatcctataatatcaaagatcttgaacatgacttcaaggaacatgatataaaagtttttaactttacatcaattttggaag 19347328  T
Q  163 caactatggagttttccccagaaaacaaattaggacagggaggctatggacc 214  Q
    |||||||||| ||||| ||  ||||||| ||||||||||| |||||||||||    
T  19347329 caactatggacttttcacctaaaaacaagttaggacagggcggctatggacc 19347380  T

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Target: chr8; HSP #15
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 94 - 228
Target Start/End: Complemental strand, 19171483 - 19171349
Alignment:
Q  94 tcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagcaactatggagttttccccagaaaacaaatt 193  Q
    |||||||||||||||| || ||||| || |||||||||||||||||||||| | ||||||||||||||||||||||| | ||||| || |||||||| ||    
T  19171483 tcaaagatcttgaagatgacttcaaaggacatgatataaaagtttttaactattcatcaattttggaagcaactatgaacttttcacctgaaaacaagtt 19171384  T
Q  194 aggacagggaggctatggacctgtttacaaggtga 228  Q
    ||| |||||||| |||||||||||||| |||||||    
T  19171383 agggcagggaggttatggacctgtttataaggtga 19171349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 19501534 - 19501476
Alignment:
Q  242 taattatacattaataattaagtttgtttaaaa-caagttttaaattacccttacaatt 299  Q
    ||||||||||||||||| ||||||||||||||| || ||| ||||||||  ||||||||    
T  19501534 taattatacattaataaataagtttgtttaaaagcatgttgtaaattactattacaatt 19501476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 36312646 - 36312476
Alignment:
Q  64 atttggtggattccaataaatcatatgatatcaaagatcttgaagacgatttcaaggggcatgatataaaagtttttaactttacatcaattttggaagc 163  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||  || ||||||| |||||    
T  36312646 atttggcggattccaatgaatcatatgatatcaaagatcttgaagatgacttcaagggacatgatataaaagtttttaacttcgcaacaattttagaagc 36312547  T
Q  164 aactatggagttttccccagaaaacaaattaggacagggaggctatggacctgtttacaaggtgattttaa 234  Q
    ||||||| | |||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||| |||||    
T  36312546 aactatgaatttttcccctgaaaacaagttaggacagggaggctatggacccgtttataaggtgactttaa 36312476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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