View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19311_low_2 (Length: 300)
Name: NF19311_low_2
Description: NF19311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19311_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 87 - 284
Target Start/End: Original strand, 11724002 - 11724199
Alignment:
| Q |
87 |
tactaactcacattttctttcagaagttgattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctcca |
186 |
Q |
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| T |
11724002 |
tactaactcaccttttctttcagaagttgattttcaaaccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctcca |
11724101 |
T |
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| Q |
187 |
tttcccttttctcttccaaaagcatttgaatttcagctcgaatagaagcgttaacttccttttgagtagcattcttgatcataacatatacaagaagt |
284 |
Q |
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| T |
11724102 |
tttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgagtagcattcttgatcataacatatacaagaagt |
11724199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 87 - 284
Target Start/End: Complemental strand, 11593990 - 11593791
Alignment:
| Q |
87 |
tactaactcacattttctttcagaagttgattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctcca |
186 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11593990 |
tactaactcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctcca |
11593891 |
T |
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| Q |
187 |
tttcccttttctcttccaaaagcatttgaatttcagctcgaatagaagcgttaacttccttttgagtagcattctt--gatcataacatatacaagaagt |
284 |
Q |
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| T |
11593890 |
tttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgagtagcattcttgagatcataacatatacaagaagt |
11593791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 87 - 284
Target Start/End: Complemental strand, 11605906 - 11605707
Alignment:
| Q |
87 |
tactaactcacattttctttcagaagttgattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctcca |
186 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11605906 |
tactaactcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctcca |
11605807 |
T |
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| Q |
187 |
tttcccttttctcttccaaaagcatttgaatttcagctcgaatagaagcgttaacttccttttgagtagcattctt--gatcataacatatacaagaagt |
284 |
Q |
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| T |
11605806 |
tttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaacttccttttgagtagcattcttgagatcataacatatacaagaagt |
11605707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 55 - 284
Target Start/End: Complemental strand, 11613340 - 11613120
Alignment:
| Q |
55 |
cattattatcttagaattaaatagtgaaacattactaactcacattttctttcagaagttgattttcaagccgaagttgtttcaaacgtgaatcacggca |
154 |
Q |
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| T |
11613340 |
cattattatcttagaattaaatagtgaaacattactaactcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaatcacggca |
11613241 |
T |
|
| Q |
155 |
tgcttggcaagatactctattttgtctctccatttcccttttctcttccaaaagcatttgaatttcagctcgaatagaagcgttaacttccttttgagta |
254 |
Q |
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|||||||||| |||| | |||||||| |||| || ||||||||| |||| |||||||||||| || |||||||||||||||||||||| |
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| T |
11613240 |
tgcttggcaaaatacattcttttgtctttcca---------tcatttccaaaagaatttctttttcagctcgaagagcagcgttaacttccttttgagta |
11613150 |
T |
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| Q |
255 |
gcattcttgatcataacatatacaagaagt |
284 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11613149 |
gcattcttgatcataacatatacaagaagt |
11613120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 284
Target Start/End: Complemental strand, 11687887 - 11687685
Alignment:
| Q |
87 |
tactaactcacattttctttcagaagttgattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctc-- |
184 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| || | | |||||||| |
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| T |
11687887 |
tactaactcaccttttctttcagaagttcattttcaagccgaagttatttcaaatgtgaatcacggcatgcttggcaaaatgtattctcctgtctctcca |
11687788 |
T |
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| Q |
185 |
-catttcccttttctcttccaaaagcatttgaatttcagctcgaatagaagcgttaacttccttttgagtagcattctt--gatcataacatatacaaga |
281 |
Q |
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||||||| ||||||||||| ||||||||| ||||||| |||||| || |||||||||| | || | |||||||||| ||||||||||||||||||| |
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| T |
11687787 |
tcatttccattttctcttccgaaagcatttcaatttcacctcgaagagcagcgttaactgctattgggatagcattcttgagatcataacatatacaaga |
11687688 |
T |
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| Q |
282 |
agt |
284 |
Q |
| |
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||| |
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| T |
11687687 |
agt |
11687685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11723339 - 11723378
Alignment:
| Q |
1 |
acatacaattattaaattagtcgatattgtagcccataat |
40 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
11723339 |
acatacaattattaaattagtcgatattgtagcccttaat |
11723378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 11688291 - 11688253
Alignment:
| Q |
2 |
catacaattattaaattagtcgatattgtagcccataat |
40 |
Q |
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|||||||||| ||||||||||||||||||||||| |||| |
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| T |
11688291 |
catacaattaataaattagtcgatattgtagcccttaat |
11688253 |
T |
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