View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19311_low_5 (Length: 225)
Name: NF19311_low_5
Description: NF19311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19311_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 7025821 - 7025629
Alignment:
| Q |
18 |
tcaactggtatgagctacatgataaggagttggaggtcattggttcaaattcaaacaaagaagacatgtaataagctttccataagctctcccaaacagt |
117 |
Q |
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| T |
7025821 |
tcaactggtatgagctacatgataaggagttggaggtcattggttcaaattcaaacaaagaagacatgtaataagctttccataagctctcccaaacagt |
7025722 |
T |
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| Q |
118 |
ctcaaattgttatgcagccagataagcttaaataaatcaatccaaacaaaccttctatccatccatcagtactataattccttacattctctg |
210 |
Q |
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| T |
7025721 |
ctcaaattgttatgcagccagataagcttaaataaatcaatccaaacaaaccttctatccatccatcagtactataattccttacattctctg |
7025629 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 24838738 - 24838666
Alignment:
| Q |
101 |
aagctctcccaaacagtctc-aaattgtt-atgcagccagataagcttaaataaatcaatccaaacaaacctt |
171 |
Q |
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| T |
24838738 |
aagctcccccaaacagtctcgaaagtgtttatgccaccggataagcttaaataactcaatccaaacaagcctt |
24838666 |
T |
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