View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19312_high_1 (Length: 707)

Name: NF19312_high_1
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19312_high_1
NF19312_high_1
[»] chr3 (1 HSPs)
chr3 (4-703)||(38480342-38481045)


Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 4 - 703
Target Start/End: Original strand, 38480342 - 38481045
Alignment:
Q  4 cgaagaatatcaaccaaaacaaaacgagcaggatacgtatgtgctcaaatattaacatatttgatagtttcttttatgaattaacatatgtgatagttaa 103  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38480342 cgaaaaatatcaaccaaaacaaaacaagcaggatacgtatgtgctcaaatattaacatatttgatagtttcttttatgaattaacatatgtgatagttaa 38480441  T
Q  104 accaaacaaccaaacagacggaaataatctgacaacgatctttgagaagctcatttgctgccaaataaggttttaaaaatcaataaacaactgcaaattt 203  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38480442 accaaacaaccaaacagaaggaaataatctgacaacgatctttgagaagctcatttgctgccaaataaggttttaaaaatcgataaacaactgcaaattt 38480541  T
Q  204 tggtcgcattataaaggnnnnnnnacatctcttcaacatatttgcaagcttgcaaccacaattacggccacccaaaagcacttggatgagatggtaagtg 303  Q
    |||||||||||||||||       || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38480542 tggtcgcattataaaggtttttttacttctcttcaacatatttgcaatcttgcaaccacaattacggccacccaaaagcacttggatgagatggtaagtg 38480641  T
Q  304 ctctcttcccctaggaatgcaaaaatgttgaggaagcgttgtgccacccattgcgattctacccagttcgaggg-ttagtctctgcagttgcccgcagat 402  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  38480642 ctctcttcctctgggaatgcaaaaatgttgaggaagcgttgtgccacccattgcgattctactcagttcgagggattagtctctgcggttgcccgcagat 38480741  T
Q  403 ga-acacaagtcaaacaaacaaac--nnnnnnnncacaattacgaccaaatcagccatatttggcggtaattctccacaatatcaagaattttgacttaa 499  Q
    || || ||| ||||||||||||||          |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  38480742 gatactcaattcaaacaaacaaacaaaaaaaaaacacaattacgaccaaatcagccatatttggcggtaattttccacaatatcaagaatcttgacttaa 38480841  T
Q  500 aagcatgctatttatggaaagaatacgcttaacgacaagnnnnnnnnggtcgtagcctagttctctctaaaatatagtatatagtatgaaataatgaaaa 599  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38480842 aagcatgctatttatggaaagaatacgcttaacgacaagaaaaaaaaagtcgtagcctagttctctctaaaatatagtatatagtatgaaataatgaaaa 38480941  T
Q  600 actcttgattagaatccaacattcaagtccaccaattccattttccttgattttatgtaaaattatgtaccaaacccaaaccaccacagaatgaaggaga 699  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38480942 actcttgactagaatccaacattcaagtccaccaattcaattttccttgattttatgtaaaattatgtaccaaacccaaaccaccacagaatcaaggaga 38481041  T
Q  700 ttgt 703  Q
    ||||    
T  38481042 ttgt 38481045  T

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