View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_high_14 (Length: 414)
Name: NF19312_high_14
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 13393483 - 13393100
Alignment:
| Q |
1 |
atgaaaaagaaagaagagttctattctagaattgcttggagcaaaggttgcttaaaggccaaagattcctactgtttgagatttaatactaagttgtaac |
100 |
Q |
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| T |
13393483 |
atgaaaaagaaagaagagttctattctagaattgcttggagcaaaggttgcttaaaggccaaagattcctactgtttgagattttatactaagttgtaac |
13393384 |
T |
|
| Q |
101 |
acaagagctattgttaattagcaccataagtttatgacttatgagtgatgaagaaaaagatagtgctaaagttttatgacaaagcaaacacgtgtacatg |
200 |
Q |
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| T |
13393383 |
acaagagctattgttaattagcaccataagtttatgacttatgagtgatgaagaaaaagatagtgctaatgttttatgacaaagcaaacacgtgtacatg |
13393284 |
T |
|
| Q |
201 |
atgacactttcactcactcacaaagttgagtgtgtctttcagttaattcagttattttaatcacaggtatattaacataaaatggtaaagtagtttttgc |
300 |
Q |
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| T |
13393283 |
atgacactttcac----tcacaaagttgagtgtgtctttcagttaattcagttattttactcacaagtatattaacataaaatggtaaagtagtttttgc |
13393188 |
T |
|
| Q |
301 |
ataaatgtacatgttttcactaaccaatcattctaacatcttaaacttttaatcaaagacttacaaaataattttataatgaacttcta |
389 |
Q |
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| T |
13393187 |
ataaatgtacatgttttcactcaccaatcattctaacatcttaaacttttaatcaaagacttac-aaataattttataatgaacgtcta |
13393100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 132 - 304
Target Start/End: Complemental strand, 13396333 - 13396166
Alignment:
| Q |
132 |
ttatgacttatgagtgatgaagaaaaagatagtgctaaagttttatgacaaagcaaacacgtgtacatgatgacactttcactcactcacaaagttgagt |
231 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||| || ||||| ||||||| |||||||||| |
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| T |
13396333 |
ttatgacttatgagtgatgaagaaaaagatagtgccaatgttttatgacaaagcaaatacgtttacattat--aacttt---tcactcataaagttgagt |
13396239 |
T |
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| Q |
232 |
gtgtctttcagttaattcagttattttaatcacaggtatattaacataaaatggtaaagtagtttttgcataa |
304 |
Q |
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||| |||||| ||||||| ||| || ||||| || |||| | | |||| ||||||||||||||||||||| |
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| T |
13396238 |
gtgcctttcaattaattctgtttttctaatcccaagtattaacaaaaaaaaaggtaaagtagtttttgcataa |
13396166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 13396453 - 13396349
Alignment:
| Q |
24 |
ttctagaattgcttggagcaaaggttgcttaaaggccaaagattcctactgtttgagatttaatactaagttgtaacacaagagctattgttaattagca |
123 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||| || || ||| | | ||||| || || |||||| | ||||||||||||||| |
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| T |
13396453 |
ttcttgaattgcttggagcaaaggttgctt-aaggccaaagattccaaccgtgtgaaaatctatact-aggaataccacaagggatattgttaattagca |
13396356 |
T |
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| Q |
124 |
ccataag |
130 |
Q |
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||||||| |
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| T |
13396355 |
ccataag |
13396349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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