View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_high_20 (Length: 371)
Name: NF19312_high_20
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 44956060 - 44956408
Alignment:
| Q |
1 |
atgagtgaagtataaatcaattttaattgtgttagttagagaattagttagttgtggattgtatgatgtgcattggacctagtttgttatgtaagaccaa |
100 |
Q |
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| T |
44956060 |
atgagtgaagtataaatcaattttaattgtgttagttagagaattagttagttgtggattgtatgatgtgcattggacctagtttgttatgtaagaccaa |
44956159 |
T |
|
| Q |
101 |
atccatatgaagtgcacaagtgtgtaaataagtgacatatccattgatagaagttagtgcagtttatcgttttttaaattccatttcctaactgtttcac |
200 |
Q |
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| T |
44956160 |
atccatatgaagtgcacaagtgtgtaaataagtgagatatccattgatagaagttagtgcagtttatcgttttttaaattccatttcctaactgtttcac |
44956259 |
T |
|
| Q |
201 |
acttcctccatcaatttcaaaaatattgagaatgcaaccacatacaaagaagcctagaaagttctagagaaagtcatgttggtgatgacaactcaagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44956260 |
acttcctccatcaatttcaaaaatattgagaatgcaaccacatacaaagaagcctagaaagttctagagaaagtcatgttggtgatgacaactcaagatt |
44956359 |
T |
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| Q |
301 |
caagaaggtacaattgcaaacaatgtgatgacaatttgagcttttgcaa |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44956360 |
caagaaggtacaattgcaaacaatgtgatgacaatttgagcttttgcaa |
44956408 |
T |
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