View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19312_high_22 (Length: 357)

Name: NF19312_high_22
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19312_high_22
NF19312_high_22
[»] scaffold0341 (2 HSPs)
scaffold0341 (70-337)||(3939-4206)
scaffold0341 (70-337)||(11595-11862)
[»] chr1 (4 HSPs)
chr1 (70-337)||(6509915-6510182)
chr1 (255-337)||(6497114-6497196)
chr1 (259-333)||(6514468-6514542)
chr1 (277-333)||(6502468-6502524)
[»] chr5 (1 HSPs)
chr5 (268-333)||(27367905-27367970)


Alignment Details
Target: scaffold0341 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 70 - 337
Target Start/End: Original strand, 3939 - 4206
Alignment:
Q  70 ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3939 ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc 4038  T
Q  170 aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc 269  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4039 aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc 4138  T
Q  270 aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4139 aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttg 4206  T

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Target: scaffold0341; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 70 - 337
Target Start/End: Original strand, 11595 - 11862
Alignment:
Q  70 ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11595 ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc 11694  T
Q  170 aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc 269  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11695 aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc 11794  T
Q  270 aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11795 aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttg 11862  T

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Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 70 - 337
Target Start/End: Original strand, 6509915 - 6510182
Alignment:
Q  70 ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6509915 ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc 6510014  T
Q  170 aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc 269  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510015 aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc 6510114  T
Q  270 aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510115 aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttg 6510182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 6497114 - 6497196
Alignment:
Q  255 atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttg 337  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||    
T  6497114 atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactatttagcatcactactacagtagccatgcttg 6497196  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 6514468 - 6514542
Alignment:
Q  259 atatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatg 333  Q
    |||||||||||||||| |||||| ||||||||||||||||||   ||||||||| ||||||||||||||||||||    
T  6514468 atatgaaatgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatg 6514542  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 6502468 - 6502524
Alignment:
Q  277 aaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatg 333  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||    
T  6502468 aaaggcattggaagagtaacagagtcgctattaagcatcactacaatagaagccatg 6502524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 27367905 - 27367970
Alignment:
Q  268 gcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatg 333  Q
    ||||||| | |||| |||| ||||| || ||||| |||||||||||| ||| ||||||||||||||    
T  27367905 gcaggtttcgaaggtattgagagagcaagagaataactattaagcatgactgcaacagaagccatg 27367970  T

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