View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_high_28 (Length: 290)
Name: NF19312_high_28
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 42212527 - 42212272
Alignment:
| Q |
19 |
cctatgtttcctactttctcatttccatgtcatcatttgcaacaataacacagacaaagatgttcttctatcattcaaattacaagtaactgatccaaac |
118 |
Q |
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| T |
42212527 |
cctatgtttcctactttctcatttccatgtcatcatttgcaacaataacacagacaaagatattcttctatcattcaaattacaagtaactgatccaaac |
42212428 |
T |
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| Q |
119 |
aatgccttgtccagttggaaacaagattctaatcactgtacctggtacggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggg |
218 |
Q |
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| T |
42212427 |
aatgccttgtccagttggaaacaagattctaatcattgtacctggtatggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggg |
42212328 |
T |
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| Q |
219 |
gacttggcctctcaggtaaactaccctctaacctctccaacctcacttaccttcat |
274 |
Q |
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| T |
42212327 |
gacttggcctctctggtaaactaccctctaacctctccaacctcacttaccttcat |
42212272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 39 - 274
Target Start/End: Complemental strand, 42224723 - 42224488
Alignment:
| Q |
39 |
atttccatgtcatcatttgcaacaataacacagacaaagatgttcttctatcattcaaattacaagtaactgatccaaacaatgccttgtccagttggaa |
138 |
Q |
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|||| |||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42224723 |
attttcatggcatcatttgcagcaataacactgacaaagatattcttctatcattcaaattacaagtaactgatccaaacaatgctttgtccagttggaa |
42224624 |
T |
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| Q |
139 |
acaagattctaatcactgtacctggtacggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcctctcaggtaaa |
238 |
Q |
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| T |
42224623 |
acaagattctaatcattgtacctggtatggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttatcaggacttaaactctctggtaaa |
42224524 |
T |
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| Q |
239 |
ctaccctctaacctctccaacctcacttaccttcat |
274 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
42224523 |
ctaccccctaacctctccaacctcacttaccttcat |
42224488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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