View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19312_high_42 (Length: 212)

Name: NF19312_high_42
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19312_high_42
NF19312_high_42
[»] chr8 (12 HSPs)
chr8 (1-66)||(41539770-41539835)
chr8 (1-66)||(2814443-2814508)
chr8 (1-66)||(397204-397269)
chr8 (1-66)||(14193524-14193588)
chr8 (1-66)||(41539970-41540034)
chr8 (9-66)||(2814243-2814299)
chr8 (1-66)||(37994907-37994972)
chr8 (3-66)||(37994708-37994771)
chr8 (8-66)||(397007-397064)
chr8 (1-66)||(14193324-14193388)
chr8 (1-66)||(44036814-44036879)
chr8 (1-50)||(25101746-25101795)
[»] scaffold0140 (2 HSPs)
scaffold0140 (1-66)||(15847-15912)
scaffold0140 (35-64)||(16045-16074)
[»] chr7 (10 HSPs)
chr7 (1-66)||(40521215-40521280)
chr7 (1-66)||(7298635-7298700)
chr7 (1-66)||(40521016-40521080)
chr7 (8-66)||(7298843-7298900)
chr7 (1-72)||(16979617-16979687)
chr7 (1-68)||(46567955-46568021)
chr7 (1-66)||(28949005-28949069)
chr7 (12-66)||(19804797-19804851)
chr7 (1-66)||(19805613-19805678)
chr7 (1-40)||(46568157-46568196)
[»] chr5 (29 HSPs)
chr5 (8-71)||(6518198-6518261)
chr5 (1-66)||(8489123-8489188)
chr5 (1-66)||(33377847-33377912)
chr5 (1-64)||(8323907-8323970)
chr5 (1-66)||(5146702-5146767)
chr5 (1-66)||(19898953-19899018)
chr5 (1-66)||(26534697-26534762)
chr5 (3-66)||(6518404-6518466)
chr5 (1-68)||(26534504-26534571)
chr5 (1-63)||(35454649-35454710)
chr5 (1-66)||(13823347-13823412)
chr5 (1-66)||(14069861-14069925)
chr5 (1-66)||(14388519-14388583)
chr5 (1-66)||(35454451-35454515)
chr5 (1-69)||(791589-791657)
chr5 (1-68)||(42630709-42630776)
chr5 (1-63)||(19897228-19897289)
chr5 (1-63)||(42630906-42630968)
chr5 (1-66)||(130254-130319)
chr5 (1-66)||(228717-228782)
chr5 (9-66)||(791810-791867)
chr5 (1-66)||(5146504-5146568)
chr5 (1-66)||(8323707-8323772)
chr5 (1-49)||(40882018-40882066)
chr5 (8-66)||(130454-130512)
chr5 (3-51)||(27319668-27319716)
chr5 (1-66)||(40881792-40881855)
chr5 (1-66)||(13823150-13823214)
chr5 (8-63)||(228990-229044)
[»] chr1 (25 HSPs)
chr1 (8-66)||(48871443-48871501)
chr1 (1-66)||(23346419-23346484)
chr1 (1-66)||(10227911-10227976)
chr1 (1-66)||(26552191-26552256)
chr1 (1-66)||(28217718-28217783)
chr1 (1-66)||(7062196-7062260)
chr1 (1-66)||(10227712-10227777)
chr1 (1-62)||(19059378-19059439)
chr1 (1-66)||(48752593-48752657)
chr1 (1-66)||(48871247-48871311)
chr1 (1-66)||(50892963-50893028)
chr1 (1-66)||(50893162-50893226)
chr1 (1-65)||(39669257-39669321)
chr1 (165-212)||(47116251-47116298)
chr1 (1-66)||(28217530-28217594)
chr1 (1-66)||(41833874-41833939)
chr1 (1-66)||(42180571-42180635)
chr1 (4-64)||(26551992-26552052)
chr1 (1-73)||(41834075-41834146)
chr1 (3-65)||(50905113-50905175)
chr1 (1-66)||(4156892-4156956)
chr1 (1-57)||(19059577-19059633)
chr1 (1-57)||(23346620-23346675)
chr1 (1-65)||(50904992-50905058)
chr1 (1-39)||(7062034-7062072)
[»] chr4 (13 HSPs)
chr4 (1-66)||(5121006-5121071)
chr4 (1-66)||(11147014-11147079)
chr4 (3-66)||(40533963-40534026)
chr4 (1-66)||(3102739-3102804)
chr4 (1-66)||(18381508-18381573)
chr4 (1-66)||(40534162-40534227)
chr4 (3-66)||(3102540-3102603)
chr4 (3-66)||(37177827-37177890)
chr4 (3-65)||(13690216-13690278)
chr4 (1-66)||(18936876-18936941)
chr4 (1-66)||(9231580-9231645)
chr4 (3-66)||(18936676-18936738)
chr4 (1-63)||(11147224-11147285)
[»] chr3 (13 HSPs)
chr3 (1-66)||(19580509-19580574)
chr3 (1-66)||(36635437-36635502)
chr3 (1-66)||(27073107-27073172)
chr3 (1-66)||(33214443-33214508)
chr3 (3-66)||(11651000-11651063)
chr3 (3-66)||(33219072-33219135)
chr3 (1-68)||(36274118-36274184)
chr3 (1-66)||(33214638-33214703)
chr3 (1-73)||(10598801-10598873)
chr3 (8-68)||(10599004-10599064)
chr3 (8-66)||(27072913-27072971)
chr3 (1-63)||(36635241-36635302)
chr3 (1-66)||(36274324-36274389)
[»] chr2 (22 HSPs)
chr2 (1-66)||(15332861-15332926)
chr2 (1-66)||(36059286-36059351)
chr2 (1-66)||(42028578-42028643)
chr2 (1-67)||(16115243-16115309)
chr2 (1-65)||(3671822-3671885)
chr2 (3-66)||(13280036-13280099)
chr2 (3-66)||(38086168-38086231)
chr2 (3-66)||(42028779-42028842)
chr2 (1-67)||(31860078-31860144)
chr2 (1-66)||(2059490-2059555)
chr2 (1-66)||(2059683-2059748)
chr2 (1-66)||(7317834-7317899)
chr2 (1-66)||(16115046-16115111)
chr2 (1-66)||(31470587-31470651)
chr2 (1-66)||(31860284-31860349)
chr2 (1-66)||(38085967-38086031)
chr2 (8-66)||(13279840-13279898)
chr2 (9-66)||(15330449-15330505)
chr2 (9-66)||(31470785-31470841)
chr2 (5-66)||(3672026-3672087)
chr2 (1-66)||(7317635-7317700)
chr2 (37-66)||(36059248-36059277)
[»] chr6 (8 HSPs)
chr6 (1-65)||(7789869-7789933)
chr6 (1-65)||(33022367-33022431)
chr6 (3-66)||(21389021-21389084)
chr6 (1-63)||(21389221-21389282)
chr6 (1-66)||(33022164-33022229)
chr6 (1-55)||(7789678-7789731)
chr6 (9-65)||(28472568-28472624)
chr6 (9-65)||(29859757-29859813)
[»] scaffold0214 (2 HSPs)
scaffold0214 (1-62)||(11630-11691)
scaffold0214 (1-66)||(11826-11891)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-66)||(37446-37511)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41539835 - 41539770
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41539835 tgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 41539770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2814443 - 2814508
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2814443 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 397204 - 397269
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  397204 tgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctc 397269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14193524 - 14193588
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  14193524 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 14193588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41539970 - 41540034
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  41539970 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 41540034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 2814299 - 2814243
Alignment:
Q  9 tttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  2814299 tttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 2814243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37994907 - 37994972
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  37994907 tgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 37994771 - 37994708
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||| ||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  37994771 tcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 397064 - 397007
Alignment:
Q  8 ttttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||||||||    
T  397064 ttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14193388 - 14193324
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||| ||| |||||||||||||||||||| |||| ||||||||    
T  14193388 tgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctc 14193324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44036879 - 44036814
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||| |||||||||| |||||| |||||| ||||||||||| |||||||| |||||||||    
T  44036879 tgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctc 44036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25101795 - 25101746
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcc 50  Q
    |||||||||||| |||||||| || |||||||||| ||||||||||||||    
T  25101795 tgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15912 - 15847
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15912 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 16045 - 16074
Alignment:
Q  35 atgttaggttcgttcctacacaagaatttc 64  Q
    ||||||||||||||||||||||||||||||    
T  16045 atgttaggttcgttcctacacaagaatttc 16074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40521215 - 40521280
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40521215 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7298700 - 7298635
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  7298700 tgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40521080 - 40521016
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  40521080 tgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 40521016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 7298843 - 7298900
Alignment:
Q  8 ttttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  7298843 ttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 7298900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16979617 - 16979687
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcgttata 72  Q
    |||||| |||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  16979617 tgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctcattata 16979687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 46568021 - 46567955
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcgt 68  Q
    |||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||    
T  46568021 tgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaatttttcgt 46567955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28949005 - 28949069
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||    
T  28949005 tgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 19804851 - 19804797
Alignment:
Q  12 aatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||||||| |||||| || ||| ||||||||||||||||||||||||||||||    
T  19804851 aatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctc 19804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19805613 - 19805678
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||| | | |||| |||||| |||| |||||||||||||||||||||||||    
T  19805613 tgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctc 19805678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 46568157 - 46568196
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgtta 40  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  46568157 tgtcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 6518261 - 6518198
Alignment:
Q  8 ttttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcgttat 71  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6518261 ttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctcattat 6518198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8489188 - 8489123
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  8489188 tgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctc 8489123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33377847 - 33377912
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  33377847 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8323907 - 8323970
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttc 64  Q
    |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  8323907 tgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5146702 - 5146767
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  5146702 tgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctc 5146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19898953 - 19899018
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  19898953 tgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26534697 - 26534762
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  26534697 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 26534762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 6518404 - 6518466
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||    
T  6518404 tcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctc 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 26534571 - 26534504
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcgt 68  Q
    |||||| |||||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||||||    
T  26534571 tgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctcgt 26534504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35454649 - 35454710
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaattt 63  Q
    |||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  35454649 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13823347 - 13823412
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||||    
T  13823347 tgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14069925 - 14069861
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  14069925 tgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctc 14069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14388519 - 14388583
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||    
T  14388519 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35454515 - 35454451
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||    
T  35454515 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 791657 - 791589
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcgtt 69  Q
    |||||| |||||||||||||| |||||| ||| || ||||||||||||||||||||| |||||||||||    
T  791657 tgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctcgtt 791589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 42630776 - 42630709
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcgt 68  Q
    |||||| ||||| |||||||| |||||| |||||| ||||||||||||| ||||||||||||||||||    
T  42630776 tgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctcgt 42630709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19897289 - 19897228
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaattt 63  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  19897289 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42630906 - 42630968
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaattt 63  Q
    |||||||||||||||| |||| |||||| |||||| ||||||||||| |||||||||||||||    
T  42630906 tgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 130319 - 130254
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||  ||| | ||||||||||||||||||||||||||||||    
T  130319 tgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctc 130254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 228782 - 228717
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| |||| | ||||||||||||||||||||||||||||||||  ||||||||    
T  228782 tgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 791810 - 791867
Alignment:
Q  9 tttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||| |||||  |||||| ||||||||||||||||||||||||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5146568 - 5146504
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||    
T  5146568 tgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8323772 - 8323707
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| |||| |||||  |||||| ||||||||||||||||||||||||||||||    
T  8323772 tgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40882018 - 40882066
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttc 49  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  40882018 tgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 130454 - 130512
Alignment:
Q  8 ttttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||||||||||| |||||| |||||| |||||||||||| ||||| |||||||||||    
T  130454 ttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 27319668 - 27319716
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcct 51  Q
    ||||||||||||||||||| ||||||||||||||||||| || ||||||    
T  27319668 tcatattttaatttgttgtttgtaagaatgatatgttagattggttcct 27319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40881855 - 40881792
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| |||| ||||||||| ||  ||||||||||||||||||||| ||||||||    
T  40881855 tgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13823214 - 13823150
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||| ||| |||| | || |||||||| ||||||||||||||||||||||||||||||    
T  13823214 tgtcatgttttagtttattgtttatacgaatgata-gttaggttcgttcctacacaagaatttctc 13823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 228990 - 229044
Alignment:
Q  8 ttttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaattt 63  Q
    |||||||||||||| ||||||||||||| |||| ||||||| |||||||| |||||    
T  228990 ttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 48871443 - 48871501
Alignment:
Q  8 ttttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48871443 ttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23346484 - 23346419
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23346484 tgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 23346419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10227911 - 10227976
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  10227911 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 10227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26552191 - 26552256
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||||||||| |||||| |||||| |||||||||| |||||||||||||||||||    
T  26552191 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28217718 - 28217783
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  28217718 tgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctc 28217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7062196 - 7062260
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||    
T  7062196 tgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctc 7062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10227777 - 10227712
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||    
T  10227777 tgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19059439 - 19059378
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatt 62  Q
    |||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  19059439 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 48752593 - 48752657
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||    
T  48752593 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48871311 - 48871247
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  48871311 tgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 50893028 - 50892963
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||    
T  50893028 tgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 50893162 - 50893226
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||    
T  50893162 tgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39669257 - 39669321
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttct 65  Q
    |||||| |||||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||    
T  39669257 tgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 47116298 - 47116251
Alignment:
Q  165 gttgagttatatgcattgttcgatcaatatataaaaatgttctattct 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47116298 gttgagttatatgcattgttcgatcaacatataaaaatgttctattct 47116251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28217594 - 28217530
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||||||||||  ||||||||||||||||||| |||||||||    
T  28217594 tgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctc 28217530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41833939 - 41833874
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||||||||||| |||| |||||| ||| |||||||||||||    
T  41833939 tgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42180635 - 42180571
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||    
T  42180635 tgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaatttctc 42180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 26552052 - 26551992
Alignment:
Q  4 catattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttc 64  Q
    ||||||||||||| |||| |||||| |||||| ||||| ||||||||||||||||||||||    
T  26552052 catattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 41834075 - 41834146
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcgttatag 73  Q
    |||||| |||||||||||||| ||||| |||| || |||| ||||||||||||||||||||||||| ||||||    
T  41834075 tgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctcattatag 41834146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 50905113 - 50905175
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttct 65  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||||  ||||||| |||||||    
T  50905113 tcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4156956 - 4156892
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| || | ||||||||||||| ||||||||| ||||||||||||||||||||    
T  4156956 tgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctc 4156892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 19059577 - 19059633
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaa 57  Q
    ||||||||||||||||||| | | |||| |||||| |||||||||||||||||||||    
T  19059577 tgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaa 19059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23346620 - 23346675
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaa 57  Q
    |||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  23346620 tgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 50905058 - 50904992
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgt--taggttcgttcctacacaagaatttct 65  Q
    |||||| |||||| ||||||| ||||| |||||||| |  |||||||||||||||||||||||||||    
T  50905058 tgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 7062072 - 7062034
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgtt 39  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  7062072 tgtcatgttttaatttgttgtttgtaagaatgatatgtt 7062034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5121006 - 5121071
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  5121006 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctc 5121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11147079 - 11147014
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  11147079 tgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctc 11147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 40534026 - 40533963
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  40534026 tcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 40533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3102739 - 3102804
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  3102739 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18381508 - 18381573
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  18381508 tgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctc 18381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40534162 - 40534227
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  40534162 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 3102603 - 3102540
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  3102603 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 37177827 - 37177890
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  37177827 tcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctc 37177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 13690278 - 13690216
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttct 65  Q
    |||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  13690278 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18936876 - 18936941
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  18936876 tgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctc 18936941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9231645 - 9231580
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| ||| || | ||||||||||||||||||||||||||||    
T  9231645 tgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 9231580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 18936738 - 18936676
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||| |||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||    
T  18936738 tcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctc 18936676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11147224 - 11147285
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaattt 63  Q
    |||||||||||||||| |||| ||||||||| ||| ||||| |||||| ||||| ||||||||    
T  11147224 tgtcatattttaatttattgtttgtaagaataata-gttagattcgtttctacataagaattt 11147285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19580509 - 19580574
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  19580509 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctc 19580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36635437 - 36635502
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  36635437 tgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27073107 - 27073172
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  27073107 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33214508 - 33214443
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  33214508 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 11651063 - 11651000
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||    
T  11651063 tcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 33219135 - 33219072
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  33219135 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 36274184 - 36274118
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcgt 68  Q
    |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||    
T  36274184 tgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa-aatttctcgt 36274118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33214638 - 33214703
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||||    
T  33214638 tgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 33214703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10598873 - 10598801
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcgttatag 73  Q
    |||||| |||||||||||||| |||||  |||||| |||||||||||||||||||||||||||| | ||||||    
T  10598873 tgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttccctttatag 10598801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 10599004 - 10599064
Alignment:
Q  8 ttttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcgt 68  Q
    |||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||    
T  10599004 ttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctcgt 10599064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 27072971 - 27072913
Alignment:
Q  8 ttttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||||||||||| |||||| ||||||  |||||||||||||||||||||||||||||    
T  27072971 ttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36635302 - 36635241
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaattt 63  Q
    |||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  36635302 tgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36274324 - 36274389
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||  |||||| ||||| |||||||||||| |||||||||||    
T  36274324 tgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctc 36274389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15332861 - 15332926
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15332861 tgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36059286 - 36059351
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  36059286 tgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 36059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42028643 - 42028578
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  42028643 tgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16115243 - 16115309
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcg 67  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||||||    
T  16115243 tgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctcg 16115309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3671885 - 3671822
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttct 65  Q
    |||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  3671885 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 13280036 - 13280099
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  13280036 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 13280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 38086168 - 38086231
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||||||||    
T  38086168 tcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 42028779 - 42028842
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  42028779 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31860144 - 31860078
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctcg 67  Q
    |||||| |||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||    
T  31860144 tgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctcg 31860078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2059555 - 2059490
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||||||||| |||||||| |||||| |||||| ||||||||||||||||| ||||||||||||    
T  2059555 tgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2059683 - 2059748
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||||||||| |||||| |||||| |||||||||||||| |||||| ||||||||    
T  2059683 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctc 2059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7317834 - 7317899
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  7317834 tgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 7317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16115111 - 16115046
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||||| ||||||| ||||||||    
T  16115111 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31470651 - 31470587
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||    
T  31470651 tgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31860284 - 31860349
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||    
T  31860284 tgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 31860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38086031 - 38085967
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||    
T  38086031 tgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 13279898 - 13279840
Alignment:
Q  8 ttttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||||||||||| |||||| ||||||  |||||||||||||||||||||||||||||    
T  13279898 ttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  9 tttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  15330505 tttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 31470785 - 31470841
Alignment:
Q  9 tttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||    
T  31470785 tttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 3672026 - 3672087
Alignment:
Q  5 atattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||| | ||||| |||||||| |||| ||||||||| || |||||||||||    
T  3672026 atattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctc 3672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7317700 - 7317635
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| ||||| ||||||||  ||||| |||||| ||||||||||||||||||||| | ||||||    
T  7317700 tgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaaaagtttctc 7317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 36059277 - 36059248
Alignment:
Q  37 gttaggttcgttcctacacaagaatttctc 66  Q
    ||||||||||||||||||||||||||||||    
T  36059277 gttaggttcgttcctacacaagaatttctc 36059248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 7789869 - 7789933
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttct 65  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  7789869 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33022367 - 33022431
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttct 65  Q
    |||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  33022367 tgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 21389084 - 21389021
Alignment:
Q  3 tcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  21389084 tcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21389221 - 21389282
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaattt 63  Q
    |||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  21389221 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33022229 - 33022164
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||    
T  33022229 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctc 33022164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7789731 - 7789678
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacac 55  Q
    |||||| |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  7789731 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 28472568 - 28472624
Alignment:
Q  9 tttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttct 65  Q
    ||||||||||||| | ||| |||||||| ||||||||||||||||| || |||||||    
T  28472568 tttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 29859757 - 29859813
Alignment:
Q  9 tttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttct 65  Q
    ||||||||||||| | ||| |||||||| ||||||||||||||||| || |||||||    
T  29859757 tttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11691 - 11630
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatt 62  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||    
T  11691 tgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11826 - 11891
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||    
T  11826 tgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37511 - 37446
Alignment:
Q  1 tgtcatattttaatttgttgtctgtaagaatgatatgttaggttcgttcctacacaagaatttctc 66  Q
    |||||| |||||||||||||| |||||| ||| || | ||||||||||||||||||||||||||||    
T  37511 tgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctc 37446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University