View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_high_43 (Length: 210)
Name: NF19312_high_43
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_high_43 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 47385084 - 47385293
Alignment:
| Q |
1 |
cttccattagtctctaattttgtgcttcttgcgacagaggagtcccttgaaacaccattatttgtgctgagataaattaaccttgatgattacgaatgca |
100 |
Q |
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| T |
47385084 |
cttccattagtctctaattttgtgcttcttgcgacaggggagtcccttgaaacgccattatttgtgctgagataaattaaccttgatgattacgaatgca |
47385183 |
T |
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| Q |
101 |
catgcatgtgccaaaagcattttgttcctcaaacacatttgcgtccatgttgcacttaaatgcttacttgcggcttactccaacattatgttgttgcgga |
200 |
Q |
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| T |
47385184 |
catgcatgtgccaaaagcattttgttcctcaaacacatttgcgtccatgttgcacttaaatgcttacttgcggcttactccaacattatgttgttgcgga |
47385283 |
T |
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| Q |
201 |
ttgctctccc |
210 |
Q |
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|||||||||| |
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| T |
47385284 |
ttgctctccc |
47385293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 54 - 210
Target Start/End: Original strand, 39993712 - 39993857
Alignment:
| Q |
54 |
accattatttgtgctgagataaattaaccttgatgattacgaatgcacatgcatgtgccaaaagcattttgttcctcaaacacatttgcgtccatgttgc |
153 |
Q |
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| T |
39993712 |
accattattttttatgagataaattaaccttgatgattacgaatgcacatgcatgtgcc-aaagcattttgttcctaaaaaacat-----------ttgc |
39993799 |
T |
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| Q |
154 |
ac-ttaaatgcttacttgcggcttactccaacattatgttgttgcggattgctctccc |
210 |
Q |
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| T |
39993800 |
actttaaatgcttacttgcagcttactccaacattatgttgctgcggattgctctccc |
39993857 |
T |
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