View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_high_6 (Length: 524)
Name: NF19312_high_6
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 40 - 505
Target Start/End: Complemental strand, 47702352 - 47701887
Alignment:
| Q |
40 |
aagaggttccactaacattatttgctttcaaagtatttaagaagtttccaaggctcttgactattccctgccagtgagcaatcaaggctttttgcgcttc |
139 |
Q |
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| T |
47702352 |
aagaggttccactaacattatttgctttcaaagtatttaagaagtttccaaggctcttgactattccctgccagtgagcaatcaaggctttttgcgcttc |
47702253 |
T |
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| Q |
140 |
agtgtttgcaactgaacgtgatgatcccttaactaagctcgctctggatgttcttggtgcctatctcattacattcaaacagttacgtgttaaatcattg |
239 |
Q |
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| T |
47702252 |
agtgtttgcaactgaacgtgatgatcccttaactaagctcgctctggatgttcttggtgcctatctcattacattcaaacagttacgtgttaaatcattg |
47702153 |
T |
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| Q |
240 |
aatttgaatggcaatttaagaaatgaaaagcttttgaaatgtaagaaagcatgcacagtatatcagtagatagaagtttactaagcataatcacgaaatt |
339 |
Q |
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| T |
47702152 |
aatttgaatggcaatttaagaaatgaaaagctttagaaatgtaagaaagcatgcacagtatatcagtagatagaagtttactaagcataatcacgaaatt |
47702053 |
T |
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| Q |
340 |
gttgtacctggatgcatagtccaagcaagggagaaatttctttcttcaagttatctcgaatcattccatatatcttttccacataagctgtaagctgctg |
439 |
Q |
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| T |
47702052 |
gttgtacctggatgcatagtccaagcaagggagaaatttctttcttcaagttatctcgaatcattccatatatcttttccacataagctgtaagctgctg |
47701953 |
T |
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| Q |
440 |
tttgaaaagcagagctggatacttggcctcaacctgtcttaatgtatctcctcccccattcatgct |
505 |
Q |
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| T |
47701952 |
tttgaaaagcagagctggatacttggcctcaacctgtcttaatgtatctcctcccccattcatgct |
47701887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 39814595 - 39814506
Alignment:
| Q |
385 |
tcaagttatctcgaatcattccatatatcttttccacataagctgtaagctgctgtttgaaaagcagagctggatacttggcctcaacct |
474 |
Q |
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| T |
39814595 |
tcaagttatctcggatgatgccatatattttctccaagtaggctgtgagctgctgcttgaaaagcaaagcagggtacttggcctctacct |
39814506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 35818776 - 35818841
Alignment:
| Q |
334 |
gaaattgttgtacctggatgcatagtccaagcaagggagaaatttctttcttcaagttatctcgaa |
399 |
Q |
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| T |
35818776 |
gaaattgtcatacctggatgcataatccaagtaatggagaaatttctttcttgaagttatcacgaa |
35818841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 469
Target Start/End: Original strand, 13847827 - 13847903
Alignment:
| Q |
393 |
tctcgaatcattccatatatcttttccacataagctgtaagctgctgtttgaaaagcagagctggatacttggcctc |
469 |
Q |
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| T |
13847827 |
tctcgaaggattccatatatcttttctacaaaagctgcaagctgttgcttgaaaagcaaagctggatattttgcctc |
13847903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 460
Target Start/End: Original strand, 13839204 - 13839271
Alignment:
| Q |
393 |
tctcgaatcattccatatatcttttccacataagctgtaagctgctgtttgaaaagcagagctggata |
460 |
Q |
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| T |
13839204 |
tctcgaaggattccatatatcttttctacaaaagctgcaagctgttgcttgaaaagcaaagctggata |
13839271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 35818561 - 35818633
Alignment:
| Q |
141 |
gtgtttgcaactgaacgtgatgatcccttaactaagctcgctctggatgttcttggtgcctatctcattacat |
213 |
Q |
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| T |
35818561 |
gtgtttgcaacagaacatgatgatcacttgaccaatcttgctctggaagttcttggcgccaatctcatcacat |
35818633 |
T |
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