View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19312_high_8 (Length: 496)

Name: NF19312_high_8
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19312_high_8
NF19312_high_8
[»] chr5 (8 HSPs)
chr5 (12-482)||(26033284-26033754)
chr5 (43-482)||(38180533-38180952)
chr5 (43-482)||(38190179-38190598)
chr5 (43-482)||(38207757-38208176)
chr5 (43-482)||(38217404-38217823)
chr5 (43-482)||(38455893-38456312)
chr5 (26-302)||(38446982-38447258)
chr5 (398-482)||(38447402-38447486)
[»] chr4 (3 HSPs)
chr4 (64-375)||(53351796-53352110)
chr4 (375-435)||(53351679-53351739)
chr4 (417-482)||(53351399-53351463)
[»] chr1 (4 HSPs)
chr1 (75-343)||(38342328-38342596)
chr1 (75-343)||(38446521-38446789)
chr1 (417-482)||(38342704-38342769)
chr1 (417-482)||(38446897-38446962)


Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 12 - 482
Target Start/End: Complemental strand, 26033754 - 26033284
Alignment:
Q  12 atcatcattagtacgtattatcatcatgtcttcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26033754 atcatcattagtacgtattatcatcatgtcttcatcatcatcggtcgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatat 26033655  T
Q  112 gtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26033654 gtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaatgccgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctgc 26033555  T
Q  212 aaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26033554 aaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctga 26033455  T
Q  312 ggaggtaatttcttattcatgctttacttcttttactttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26033454 ggaggtaatttcttattcatgctttacttcttttactttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatca 26033355  T
Q  412 tgtcattaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26033354 tgtcattaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 26033284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 43 - 482
Target Start/End: Original strand, 38180533 - 38180952
Alignment:
Q  43 tcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38180533 tcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacg 38180632  T
Q  143 aggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtga 242  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38180633 aggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtga 38180732  T
Q  243 agaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaat---ttcttattcatgctttact 339  Q
    ||||||| || | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||   |||||||||||||||||||    
T  38180733 agaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggtaatttcttcttattcatgctttact 38180832  T
Q  340 tcttttact---ttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttcttt 436  Q
    |||||||||   ||||||||||| ||||||| ||||||||||||||||             ||||||||||||||||||||||||||||||             
T  38180833 tcttttactttcttctttaatttcaaatattcatctatcacttgtgtt------------atattttgttgatcatgtcattaatttgtat--------- 38180911  T
Q  437 ttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 482  Q
         |||||||||||||||||||||||||||||||||||||||||    
T  38180912 -----tcagttaccgggaagaagcgataatgacatcaagaactttt 38180952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 43 - 482
Target Start/End: Complemental strand, 38190598 - 38190179
Alignment:
Q  43 tcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38190598 tcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacg 38190499  T
Q  143 aggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtga 242  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38190498 aggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtga 38190399  T
Q  243 agaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatt---tcttattcatgctttact 339  Q
    ||||||| || | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||||   ||||||||||||||||||    
T  38190398 agaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggtaatttcttcttattcatgctttact 38190299  T
Q  340 tcttttact---ttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttcttt 436  Q
    |||||||||   ||||||||||| ||||||| ||||||||||||||||             ||||||||||||||||||||||||||||||             
T  38190298 tcttttactttcttctttaatttcaaatattcatctatcacttgtgtt------------atattttgttgatcatgtcattaatttgtat--------- 38190220  T
Q  437 ttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 482  Q
         |||||||||||||||||||||||||||||||||||||||||    
T  38190219 -----tcagttaccgggaagaagcgataatgacatcaagaactttt 38190179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 43 - 482
Target Start/End: Original strand, 38207757 - 38208176
Alignment:
Q  43 tcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38207757 tcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacg 38207856  T
Q  143 aggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtga 242  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38207857 aggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtga 38207956  T
Q  243 agaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaat---ttcttattcatgctttact 339  Q
    ||||||| || | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||   |||||||||||||||||||    
T  38207957 agaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggtaatttcttcttattcatgctttact 38208056  T
Q  340 tcttttact---ttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttcttt 436  Q
    |||||||||   ||||||||||| ||||||| ||||||||||||||||             ||||||||||||||||||||||||||||||             
T  38208057 tcttttactttcttctttaatttcaaatattcatctatcacttgtgtt------------atattttgttgatcatgtcattaatttgtat--------- 38208135  T
Q  437 ttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 482  Q
         |||||||||||||||||||||||||||||||||||||||||    
T  38208136 -----tcagttaccgggaagaagcgataatgacatcaagaactttt 38208176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 43 - 482
Target Start/End: Complemental strand, 38217823 - 38217404
Alignment:
Q  43 tcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38217823 tcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacg 38217724  T
Q  143 aggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtga 242  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38217723 aggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtga 38217624  T
Q  243 agaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatt---tcttattcatgctttact 339  Q
    ||||||| || | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||||   ||||||||||||||||||    
T  38217623 agaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggtaatttcttcttattcatgctttact 38217524  T
Q  340 tcttttact---ttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttcttt 436  Q
    |||||||||   ||||||||||| ||||||| ||||||||||||||||             ||||||||||||||||||||||||||||||             
T  38217523 tcttttactttcttctttaatttcaaatattcatctatcacttgtgtt------------atattttgttgatcatgtcattaatttgtat--------- 38217445  T
Q  437 ttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 482  Q
         |||||||||||||||||||||||||||||||||||||||||    
T  38217444 -----tcagttaccgggaagaagcgataatgacatcaagaactttt 38217404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 43 - 482
Target Start/End: Original strand, 38455893 - 38456312
Alignment:
Q  43 tcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38455893 tcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacg 38455992  T
Q  143 aggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtga 242  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38455993 aggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtga 38456092  T
Q  243 agaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaat---ttcttattcatgctttact 339  Q
    ||||||| || | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||   |||||||||||||||||||    
T  38456093 agaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggtaatttcttcttattcatgctttact 38456192  T
Q  340 tcttttact---ttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttcttt 436  Q
    |||||||||   ||||||||||| ||||||| ||||||||||||||||             ||||||||||||||||||||||||||||||             
T  38456193 tcttttactttcttctttaatttcaaatattcatctatcacttgtgtt------------atattttgttgatcatgtcattaatttgtat--------- 38456271  T
Q  437 ttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 482  Q
         |||||||||||||||||||||||||||||||||||||||||    
T  38456272 -----tcagttaccgggaagaagcgataatgacatcaagaactttt 38456312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 38446982 - 38447258
Alignment:
Q  26 gtattatcatcatgtcttcatcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatgg 125  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  38446982 gtatcatcatcatgtcttcatcatcatcggtcgatactaaaaaaggaaaatggtcaaaagaagaggatgaaatattaaaagcatatgtggaaaaacatgg 38447081  T
Q  126 aaccagaaattggaacgaggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaa 225  Q
    ||||||||||||| |||||||||| || ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| ||||   ||| | ||| |||    
T  38447082 aaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaa 38447181  T
Q  226 aagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaa 302  Q
    ||||||||||||||| ||||||||||||  ||||| |||  |||   ||| |||| ||||| |||||||||||||||    
T  38447182 aagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaa 38447258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 398 - 482
Target Start/End: Original strand, 38447402 - 38447486
Alignment:
Q  398 tattttgttgatcatgtcattaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 482  Q
    |||||| |||||||||||||||||||| ||||||| |||||||| ||||| || ||||||| |||||||||||||||||||||||    
T  38447402 tatttttttgatcatgtcattaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaactttt 38447486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 64 - 375
Target Start/End: Complemental strand, 53352110 - 53351796
Alignment:
Q  64 aaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaa-----cgaggtatcgaaaaatgc 158  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||     ||||||||| | ||||||    
T  53352110 aaaaaaggaaaatggtcaaaagaagaggatgaaatgttaaaagcatatgtggaaaaacatggaaccagaaattggaatggaacgaggtatcaagaaatgc 53352011  T
Q  159 ggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaa 258  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| || ||||||||||||||| |||| |||    
T  53352010 ggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaa 53351911  T
Q  259 gtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatttcttattcatgctttacttctttt-actttctttaat 357  Q
    || |||  ||||| ||| || | |||||||||||||||||||||||||||| | ||||   |||  | |||||||||||||||||||   ||| ||| ||    
T  53351910 gtctttcggttctttaacaactttggtgaattcaaatggtctaagctggctcaagagg---ttttatcttcatgctttacttcttttctttttgttttat 53351814  T
Q  358 ttgaaatattgatctatc 375  Q
    |||||||||| |||||||    
T  53351813 ttgaaatatttatctatc 53351796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 53351739 - 53351679
Alignment:
Q  375 cacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttctt 435  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  53351739 cacttgtgttataccttgttgattattttggtgatcatgtcattaatttgtatttgttctt 53351679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 482
Target Start/End: Complemental strand, 53351463 - 53351399
Alignment:
Q  417 ttaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 482  Q
    ||||||||||||| ||||||| |||  |||| || |||||||||||||||||||||||||| ||||    
T  53351463 ttaatttgtattctttctttt-gtgatagttgcctggaagaagcgataatgacatcaagaattttt 53351399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 343
Target Start/End: Original strand, 38342328 - 38342596
Alignment:
Q  75 atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaatgcggggcttttacgttgc 174  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||| || ||  |||| |||  ||  ||     
T  38342328 atggtcaaaagaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgt 38342427  T
Q  175 ggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctata 274  Q
    || || ||||| ||| | ||||||||||||   || | ||| ||| | | |||||||||||||||  |||||||||||  |||| | |||| ||| | |     
T  38342428 ggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaagaagaagaaaaattctttgagttatttt 38342527  T
Q  275 aaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatttcttattcatgctttacttctt 343  Q
      |||| |||||| ||||||||||||||| |||||   ||||||  || || |||||||||||||||||    
T  38342528 ctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttacttctt 38342596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 343
Target Start/End: Original strand, 38446521 - 38446789
Alignment:
Q  75 atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaatgcggggcttttacgttgc 174  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||| || ||  |||| |||  ||  ||     
T  38446521 atggtcaaaagaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgt 38446620  T
Q  175 ggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctata 274  Q
    || || ||||| ||| | ||||||||||||   || | ||| ||| | | |||||||||||||||  |||||||||||  |||| | |||| ||| | |     
T  38446621 ggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaagaagaagaaaaattctttgagttatttt 38446720  T
Q  275 aaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatttcttattcatgctttacttctt 343  Q
      |||| |||||| ||||||||||||||| |||||   ||||||  || || |||||||||||||||||    
T  38446721 ctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttacttctt 38446789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 482
Target Start/End: Original strand, 38342704 - 38342769
Alignment:
Q  417 ttaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 482  Q
    ||||||||||||| ||||||||||| ||| | || ||||||| |||||||||||||||||||||||    
T  38342704 ttaatttgtattcattctttttgtgacagatgcctggaagaaccgataatgacatcaagaactttt 38342769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 482
Target Start/End: Original strand, 38446897 - 38446962
Alignment:
Q  417 ttaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaactttt 482  Q
    ||||||||||||| ||||||||||| ||| | || ||||||| |||||||||||||||||||||||    
T  38446897 ttaatttgtattcattctttttgtgacagatgcctggaagaaccgataatgacatcaagaactttt 38446962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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