View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_high_9 (Length: 486)
Name: NF19312_high_9
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 8028844 - 8029300
Alignment:
| Q |
19 |
attttactatatttgtcttacgacgaaaattttatatggtacagaaaaaggttatttctttgacaaaagaaatgagagatgaagccataaagaacctcta |
118 |
Q |
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| T |
8028844 |
attttactatatttgttttacgacgaaaattttatatggtacagaaaaaggttatttctttgacaaaagaaatgagagatgaagccataaagaacctcta |
8028943 |
T |
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| Q |
119 |
ctgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaaattagtaaag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
8028944 |
ctgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgggccaaacactttgttggtgatatctgaagttatcaaattagttgat |
8029043 |
T |
|
| Q |
219 |
aaactttgccaagaacataatcacgagtctccagaataccaagtcttcatgaatgatcttcaagggaatgatttcaacaatatttttaggttacttgata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8029044 |
aaactttgccaagaacataatcacgagtctccagaataccaagtcttcatgaatgatcttcaagggaatgatttcaacaacatttttaggttacttgata |
8029143 |
T |
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| Q |
319 |
ggttcacagagaaactaaatgatgaagtggaagatgggattggtggtccaatctttttctatggggctcctggttctttttatggcagaatttttccaac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8029144 |
ggttcacagagaaactaaatgatgaagtggaagatgggattggtggtccaatctttttctatggggctcctggttctttttatggcaggatttttccaac |
8029243 |
T |
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| Q |
419 |
aaaaacaatgcatttcattcattcctcttacagccttcaatggctctcacaggttct |
475 |
Q |
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| T |
8029244 |
aaaaacaatgcatttcattcattcctcttacagccttcaatggctctcacaggttct |
8029300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 196
Target Start/End: Complemental strand, 7298245 - 7298122
Alignment:
| Q |
73 |
tttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgg |
172 |
Q |
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||||||||||||| ||| |||||||||||||||| | |||||||| |||||| | ||||| || | ||||||||||| |||||||||||||| |
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| T |
7298245 |
tttctttgacaaagccaataagagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctgg |
7298146 |
T |
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| Q |
173 |
gccaaacactttgtttgtgatatc |
196 |
Q |
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| T |
7298145 |
accaaacactttgtttgtggtatc |
7298122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 32709950 - 32709889
Alignment:
| Q |
147 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
208 |
Q |
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| T |
32709950 |
attgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaa |
32709889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 32704240 - 32704200
Alignment:
| Q |
147 |
attgcagatttgggttgttcttctgggccaaacactttgtt |
187 |
Q |
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| T |
32704240 |
attgcagatttgggttgctcttatggaccaaacactttgtt |
32704200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 27736976 - 27736914
Alignment:
| Q |
147 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaaa |
209 |
Q |
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|||||||| |||||||| |||| ||||||||||||| |||| |||||||| ||| |||||||| |
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| T |
27736976 |
attgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaa |
27736914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 27736751 - 27736710
Alignment:
| Q |
375 |
ttctatggggctcctggttctttttatggcagaatttttcca |
416 |
Q |
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| T |
27736751 |
ttctatggagttcctggttcattttatggcagaatttttcca |
27736710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 5811657 - 5811596
Alignment:
| Q |
147 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
208 |
Q |
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|||||||| |||||||| |||| ||| ||||||||||| || ||||| |||||| ||||||| |
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| T |
5811657 |
attgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaa |
5811596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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