View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_11 (Length: 451)
Name: NF19312_low_11
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 60 - 338
Target Start/End: Original strand, 1519779 - 1520054
Alignment:
| Q |
60 |
ttgcctatgcatctctagacttacctcagctgatcgattaatctaacaatctagatataatactttcaaccaccaagataaatactttcaaccaatagat |
159 |
Q |
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| T |
1519779 |
ttgcctatgcatctctagacttacctcagctgatcgattaatctaacaatctagatataatactttcaaccaccaagataaatattttcaaccaatagat |
1519878 |
T |
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| Q |
160 |
taatagacacagacactaatttaggcaatccaagtttgtgtgccgtgtcatggagtaaatatttttcataaacaactttttcactatggagcattaaaaa |
259 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1519879 |
taatacacacagacactaatttaggcaatccaagtttgtgtgtcgtgtcatggagtaaatatttttcataaacaactttttcactatggagcattaaaaa |
1519978 |
T |
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| Q |
260 |
ctaacaagtactagtatttgtaattaaggctaaaaattagaaatacacacacttcataaaattcatgcattttttcttt |
338 |
Q |
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|||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1519979 |
ctaacaag---tagtatttgtaattatggctaagaattagaaatacacacacttcataaaattcatgcattttttcttt |
1520054 |
T |
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