View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_12 (Length: 434)
Name: NF19312_low_12
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_12 |
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| [»] scaffold0150 (3 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 38 - 416
Target Start/End: Original strand, 8800 - 9178
Alignment:
| Q |
38 |
tacagcagcctccgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaata |
137 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8800 |
tacagccgcctctgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaata |
8899 |
T |
|
| Q |
138 |
gataggagctctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagtttcaacactgttatagagattaccaatgcta |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8900 |
gataggagctctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagtttcaacactgttatagagattaccaatgcta |
8999 |
T |
|
| Q |
238 |
ccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaa |
337 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9000 |
ccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagcttttgatgcttcagcaa |
9099 |
T |
|
| Q |
338 |
acagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaagaagtagaagaagccatatt |
416 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9100 |
acagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaagaagtagaagaagccatatt |
9178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 400
Target Start/End: Complemental strand, 18058 - 17956
Alignment:
| Q |
298 |
ttgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaag |
397 |
Q |
| |
|
||||||||||| ||||| || | ||| |||||||||||||| |||||| | |||||| | |||||||| |||||||||||||||| |||| ||||||||| |
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|
| T |
18058 |
ttgaaaagaaagtctataacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaag |
17959 |
T |
|
| Q |
398 |
aag |
400 |
Q |
| |
|
||| |
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|
| T |
17958 |
aag |
17956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8429 - 8469
Alignment:
| Q |
1 |
caatgtgtgaataaaacaaaatgttaaaacttaaaaataca |
41 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
8429 |
caatgtgtgaataaaacaaaatgttaaaacttaaaaataca |
8469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 48 - 416
Target Start/End: Complemental strand, 17020459 - 17020092
Alignment:
| Q |
48 |
tccgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaatagataggagct |
147 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
17020459 |
tccgcatctatagaacaaatttcctcaacctcccaagttgttggcatcggtattgtttgccggaagaaggcctgcaatttcagttgaagagataggagct |
17020360 |
T |
|
| Q |
148 |
ctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagtttcaacactgttatagagattaccaatgctaccaaccatgc |
247 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17020359 |
ttggggttcagtaaa-cctctttagtttggtcttgttccatataatgatcggacaaagtttcaacactgttatagagattaccaatgctaccaaccatgc |
17020261 |
T |
|
| Q |
248 |
cattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaacttt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
17020260 |
cattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaacttt |
17020161 |
T |
|
| Q |
348 |
ctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaagaagtagaagaagccatatt |
416 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17020160 |
ctcattcatggtgtcaataagaagtttgagggtcactttgttggtggaagaagtagaagaagccatatt |
17020092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 48 - 416
Target Start/End: Complemental strand, 17550896 - 17550529
Alignment:
| Q |
48 |
tccgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaatagataggagct |
147 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
17550896 |
tccgcatctatagaacaaatttcctcaacctcccaagttgttggcatcggtattgtttgccggaagaaggcctgcaatttcagttgaagagataggagct |
17550797 |
T |
|
| Q |
148 |
ctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagtttcaacactgttatagagattaccaatgctaccaaccatgc |
247 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17550796 |
ttggggttcagtaaa-cctctttagtttggtcttgttccatataatgatcggacaaagtttcaacactgttatagagattaccaatgctaccaaccatgc |
17550698 |
T |
|
| Q |
248 |
cattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaacttt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
17550697 |
cattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaacttt |
17550598 |
T |
|
| Q |
348 |
ctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaagaagtagaagaagccatatt |
416 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17550597 |
ctcattcatggtgtcaataagaagtttgagggtcactttgttggtggaagaagtagaagaagccatatt |
17550529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 17017015 - 17017117
Alignment:
| Q |
298 |
ttgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaag |
397 |
Q |
| |
|
||||||||||| |||| || | ||| |||||||||||||| |||||| | ||| || | |||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
17017015 |
ttgaaaagaaagtctacgacgggtttagatgcttcagcaaagagaactctttcaatctttgtgtcaataagaagtttgagggtcagtttggtggtggaag |
17017114 |
T |
|
| Q |
398 |
aag |
400 |
Q |
| |
|
||| |
|
|
| T |
17017115 |
aag |
17017117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 17547452 - 17547554
Alignment:
| Q |
298 |
ttgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaag |
397 |
Q |
| |
|
||||||||||| |||| || | ||| |||||||||||||| |||||| | ||| || | |||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
17547452 |
ttgaaaagaaagtctacgacgggtttagatgcttcagcaaagagaactctttcaatctttgtgtcaataagaagtttgagggtcagtttggtggtggaag |
17547551 |
T |
|
| Q |
398 |
aag |
400 |
Q |
| |
|
||| |
|
|
| T |
17547552 |
aag |
17547554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 400
Target Start/End: Complemental strand, 17522460 - 17522266
Alignment:
| Q |
206 |
tttcaacactgttatagagattaccaatgctaccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaag |
305 |
Q |
| |
|
|||||||||| | ||| ||||| || | |||||||||||||||||| | ||| || || |||||||| || | |||||| | |||| |||||||| |
|
|
| T |
17522460 |
tttcaacactctcatacagattccctaagctaccaaccatgccatttgcgcttagtagcttcacaacagtgccgattggcaagcatagcaagttgaaaag |
17522361 |
T |
|
| Q |
306 |
aaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaagaag |
400 |
Q |
| |
|
||| || | ||||| |||||| ||||||||||| |||||||||| |||| | ||||| || ||||| || | || ||||||| ||| ||||||| |
|
|
| T |
17522360 |
aaagtcaaccacagcttttgaagcttcagcaaagagaactttctgattctttgtgtcgataagaagcttcatggacactttggtggaagaagaag |
17522266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 103 - 400
Target Start/End: Original strand, 52133655 - 52133952
Alignment:
| Q |
103 |
tttgcgggaagaaggcctgcaatttcagttgaatagataggagctctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggaca |
202 |
Q |
| |
|
||||||||||||| ||| |||||| ||| ||| ||| ||||||| | ||||||| | |||| |||||||| | |||||||||||||||||| |||| |
|
|
| T |
52133655 |
tttgcgggaagaaagccagcaattccagcagaagagacaggagctattgggttcaagagttcctccttagtttggttttgttccatataattatcagaca |
52133754 |
T |
|
| Q |
203 |
aagtttcaacactgttatagagattaccaatgctaccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaa |
302 |
Q |
| |
|
|||||||||||| | |||||| ||||| |||||||||||||||||||| ||| | | |||||||| || ||||| || ||||| ||||||| || || |
|
|
| T |
52133755 |
gagtttcaacactatgatagaggttacctatgctaccaaccatgccatttttggtcagtagtttaactactgtaccgacaggcaagcgaagcaagttaaa |
52133854 |
T |
|
| Q |
303 |
aagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaagaag |
400 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52133855 |
gagaaaatctatcacagctttggaagcttcagcgaacagaactttgtcatttttagtgtcaatgagaagtttgagggtcactttgttgggagaagaag |
52133952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 371
Target Start/End: Original strand, 52142127 - 52142292
Alignment:
| Q |
206 |
tttcaacactgttatagagattaccaatgctaccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaag |
305 |
Q |
| |
|
|||||||||| | ||| ||||| || | |||||||||||||||||| | ||| || || |||||||| || | |||||||| |||| |||||||| |
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|
| T |
52142127 |
tttcaacactctcatacagattccctaagctaccaaccatgccattagcgcttagcagcttcacaacagtgccgattggcaaacatagcaagttgaaaag |
52142226 |
T |
|
| Q |
306 |
aaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaag |
371 |
Q |
| |
|
||| |||| |||| |||||| ||||||||||| |||||||||| |||| | ||||| || ||||| |
|
|
| T |
52142227 |
aaagtctacgacagcttttgaagcttcagcaaagagaactttctgattctttgtgtcgataagaag |
52142292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 354
Target Start/End: Original strand, 52145645 - 52145793
Alignment:
| Q |
206 |
tttcaacactgttatagagattaccaatgctaccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaag |
305 |
Q |
| |
|
|||||||||| | ||| ||||| || | ||||||| ||||||||| || ||| || ||||| || || |||| |||||| | |||| |||||| || |
|
|
| T |
52145645 |
tttcaacactctgatacagatttcctaaactaccaatcatgccatttgtgcttaggagcttaaccacggtgccaattggcaagcatagcaaattgaacag |
52145744 |
T |
|
| Q |
306 |
aaaatctatcacagtttttgatgcttcagcaaacagaactttctcattc |
354 |
Q |
| |
|
||| ||||| |||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
52145745 |
aaagtctattacagattttgaagcttcagcaaagagaactttctcattc |
52145793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 367
Target Start/End: Original strand, 52150221 - 52150285
Alignment:
| Q |
303 |
aagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatga |
367 |
Q |
| |
|
||||| ||||| |||| |||||||| ||||||||| ||||||||||| ||| | |||||||||| |
|
|
| T |
52150221 |
aagaatatctactacaggttttgatgtttcagcaaagagaactttctccttctttgtgtcaatga |
52150285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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