View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19312_low_13 (Length: 434)

Name: NF19312_low_13
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19312_low_13
NF19312_low_13
[»] chr6 (4 HSPs)
chr6 (1-423)||(13187984-13188406)
chr6 (83-160)||(13165502-13165579)
chr6 (5-63)||(13165570-13165627)
chr6 (194-235)||(13165450-13165491)
[»] chr4 (4 HSPs)
chr4 (255-423)||(20885721-20885889)
chr4 (235-324)||(11367734-11367823)
chr4 (180-227)||(23112929-23112976)
chr4 (260-316)||(21407822-21407878)
[»] chr2 (3 HSPs)
chr2 (254-362)||(15634563-15634671)
chr2 (260-423)||(21266901-21267064)
chr2 (179-231)||(25903599-25903651)
[»] scaffold0037 (1 HSPs)
scaffold0037 (254-347)||(109018-109111)
[»] chr1 (7 HSPs)
chr1 (252-360)||(20424327-20424435)
chr1 (260-424)||(43805879-43806043)
chr1 (260-349)||(3090803-3090893)
chr1 (179-227)||(7065025-7065073)
chr1 (179-231)||(10066178-10066230)
chr1 (179-231)||(14091227-14091279)
chr1 (179-227)||(26674804-26674852)
[»] chr5 (1 HSPs)
chr5 (285-421)||(29170958-29171094)
[»] chr7 (3 HSPs)
chr7 (260-363)||(49046245-49046348)
chr7 (179-231)||(40081870-40081922)
chr7 (179-231)||(43073074-43073126)
[»] chr3 (3 HSPs)
chr3 (260-360)||(42295392-42295492)
chr3 (117-150)||(40858653-40858686)
chr3 (117-150)||(51819248-51819281)
[»] scaffold0076 (1 HSPs)
scaffold0076 (179-231)||(16318-16370)
[»] chr8 (3 HSPs)
chr8 (179-231)||(12955310-12955362)
chr8 (179-227)||(17075339-17075387)
chr8 (179-227)||(17572883-17572931)


Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 13188406 - 13187984
Alignment:
Q  1 gggttaaatatgtttaaataaaaggttttgaaggtggaggagaacacttgatatatcttttttaagtannnnnnnn-agggcatatcttttttaagttag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||| |||||||    
T  13188406 gggttaaatatgtttaaataaaaggttttgaaggtggaggagaacacttgatatatcttttttaagtatttttttttagggcatatcttttt-aagttag 13188308  T
Q  100 tgctctataaaataatatttaaaataaatttagtgttattgaagtattataaaatttagtgttgaatacgtttttattactataaatattcaaaacctta 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13188307 tgctctataaaataatatttaaaataaatttagtgttattgaagtattataaaatttaatgttgaatacgtttttattactataaatattcaaaacctta 13188208  T
Q  200 tttttagtctctataaaattaaatcacattttagttgattttaacacttttgatcaaaaacaaactcatagccaggtatgggtttgttttcattatcttc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  13188207 tttttagtctctataaaattaaatcacattttagttgattttaacacttttgatcaaaaacaaactcatagtcgggtatgggtttgttttcattatcttc 13188108  T
Q  300 ctttagaatattggcaacctagaatttcatttgagattgttggggctattggcacgcctataattattgattagcacacattaaaccaaacatttggtca 399  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  13188107 ctttggaatattggcaacctagaatttcatttgagattgttggggctattggcacgcctataattattgatcagcacacgttaaaccaatcatttggtca 13188008  T
Q  400 ttatgcacgcgttctagttgatat 423  Q
    ||||||||||||||||||||||||    
T  13188007 ttatgcacgcgttctagttgatat 13187984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 13165579 - 13165502
Alignment:
Q  83 tatcttttttaagttagtgctctataaaataatatttaaaataaatttagtgttattgaagtattataaaatttagtg 160  Q
    |||||||||| |||||||||||||||||||| ||||||||   ||||||||||||||| | |||||||||||||||||    
T  13165579 tatctttttttagttagtgctctataaaatattatttaaatggaatttagtgttattggaatattataaaatttagtg 13165502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 13165627 - 13165570
Alignment:
Q  5 taaatatgtttaaataaaaggttttgaaggtggaggagaacacttgatatatctttttt 63  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||    
T  13165627 taaatatgtttaaataaaaggttttgtaggtggagtagaagacttgat-tatctttttt 13165570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 13165491 - 13165450
Alignment:
Q  194 accttatttttagtctctataaaattaaatcacattttagtt 235  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  13165491 accttatttttagtccctataaaatcaaatcacattttagtt 13165450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 255 - 423
Target Start/End: Original strand, 20885721 - 20885889
Alignment:
Q  255 aaaaacaaactcatagccaggtatgggtttgttttcattatcttcctttagaatattggcaacctagaatttcatttgagattgttggggctattggcac 354  Q
    ||||||||||| |||| || ||||||||| |||||||||||||| ||||  ||||||||||||||||||||| |||| |||||||||||| ||||||||     
T  20885721 aaaaacaaactgatagtcatgtatgggttcgttttcattatctttctttgtaatattggcaacctagaattttatttaagattgttggggatattggcat 20885820  T
Q  355 gcctataattattgattagcacacattaaaccaaacatttggtcattatgcacgcgttctagttgatat 423  Q
    ||||||||| |||||| |  ||||||| |||||  ||||||||||||||||| | || |||||||||||    
T  20885821 gcctataataattgatcataacacattcaaccagtcatttggtcattatgcatgtgtgctagttgatat 20885889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 11367734 - 11367823
Alignment:
Q  235 tgattttaacacttttgatcaaaaacaaactcatagccaggtatgggtttgttttcattatcttcctttagaatattggcaacctagaat 324  Q
    |||||||||  | ||| |||| || |||||||||||||||||||||||  ||||||||||||||||| | ||||||||||| || |||||    
T  11367734 tgattttaatccatttaatcataatcaaactcatagccaggtatgggtgcgttttcattatcttcctctggaatattggcatccgagaat 11367823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 23112929 - 23112976
Alignment:
Q  180 tataaatattcaaaaccttatttttagtctctataaaattaaatcaca 227  Q
    |||||||||||||||  |||||||||||| ||||||||| ||||||||    
T  23112929 tataaatattcaaaattttatttttagtccctataaaataaaatcaca 23112976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 21407822 - 21407878
Alignment:
Q  260 caaactcatagccaggtatgggtttgttttcattatcttcctttagaatattggcaa 316  Q
    ||||||||||| |||||||||||   |||| ||||||||||| | ||||||||||||    
T  21407822 caaactcataggcaggtatgggtgcattttaattatcttcctatggaatattggcaa 21407878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 254 - 362
Target Start/End: Original strand, 15634563 - 15634671
Alignment:
Q  254 caaaaacaaactcatagccaggtatgggtttgttttcattatcttcctttagaatattggcaacctagaatttcatttgagattgttggggctattggca 353  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||  || || ||||||||||| |||||||||||| |    
T  15634563 caaaaacaaactcatagtcaggtatgggttcgtttttattatcttcctttagattattggcaacctttaactttatttgagattgctggggctattggta 15634662  T
Q  354 cgcctataa 362  Q
    |||||||||    
T  15634663 cgcctataa 15634671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 423
Target Start/End: Original strand, 21266901 - 21267064
Alignment:
Q  260 caaactcatagccaggtatgggtttgttttcattatcttcctttagaatattggcaacctagaatttcatttgagattgttggggctattggcacgccta 359  Q
    ||||| |||||  ||||||||||  |||||||||||||||| |||||||||||||||  |  |||    |||||||| | |||||||||||| || ||||    
T  21266901 caaacccatagttaggtatgggtccgttttcattatcttccattagaatattggcaagatgaaatcctttttgagatagctggggctattggtaccccta 21267000  T
Q  360 taattattgattagcacacattaaaccaaacatttggtcattatgcacgcgttctagttgatat 423  Q
    |||| |||||| || | ||   |||| |  |||||||||||||||| || |||||||| |||||    
T  21267001 taataattgatgagaatactagaaacaattcatttggtcattatgctcgtgttctagtagatat 21267064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 25903651 - 25903599
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcacatttt 231  Q
    ||||||||||| ||||  || ||||||||| ||||||||| ||||||||||||    
T  25903651 ctataaatatttaaaattttgtttttagtccctataaaataaaatcacatttt 25903599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 347
Target Start/End: Original strand, 109018 - 109111
Alignment:
Q  254 caaaaacaaactcatagccaggtatgggtttgttttcattatcttcctttagaatattggcaacctagaatttcatttgagattgttggggcta 347  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||||||| |||| |||||||||| |  || || ||||||||||| ||||||||    
T  109018 caaaaacaaactcatagtcaggtatgggtccgtttttattatcttcctctagagtattggcaacttttaaatttatttgagattgctggggcta 109111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 360
Target Start/End: Original strand, 20424327 - 20424435
Alignment:
Q  252 atcaaaaacaaactcatagccaggtatgggtttgttttcattatcttcctttagaatattggcaacctagaatttcatttgagattgttggggctattgg 351  Q
    |||| |||||||||||||| ||||| ||| |  ||||||||||||| ||| | |||||||||||||||| || |   ||||||||||  |||||||||||    
T  20424327 atcagaaacaaactcatagtcaggtttggttgcgttttcattatctccctctggaatattggcaacctataactctttttgagattgcaggggctattgg 20424426  T
Q  352 cacgcctat 360  Q
     ||||||||    
T  20424427 tacgcctat 20424435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 424
Target Start/End: Complemental strand, 43806043 - 43805879
Alignment:
Q  260 caaactcatagccaggtatgggtttgttttcattatcttcctttagaatattggcaacctagaatttcatttgagattgttggggctattggcacgccta 359  Q
    ||||||||||| || ||||| ||  ||||||||||| ||||| | ||||||||||||  ||||||    |||||||||| ||| |||||||| || ||||    
T  43806043 caaactcatagtcaagtatgagtgcgttttcattattttcctctggaatattggcaagatagaatcctttttgagattgctggtgctattggtaccccta 43805944  T
Q  360 taattattgattagcacacattaaaccaaacatttggtcattatgcacgcgttctagttgatatt 424  Q
    |||| |||||| || | ||   |||| |  |||||||||||||||| || |||||||| ||||||    
T  43805943 taataattgatgagaatactagaaacaactcatttggtcattatgctcgtgttctagtagatatt 43805879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 349
Target Start/End: Complemental strand, 3090893 - 3090803
Alignment:
Q  260 caaactcatagccaggtatgggtttgttttcattatcttccttt-agaatattggcaacctagaatttcatttgagattgttggggctatt 349  Q
    ||||||||||  | |||||| || |||||||||||||  ||||| | ||||||||||||||||||||   | |||||||||||||| ||||    
T  3090893 caaactcataatcgggtatgagtgtgttttcattatcacccttttaaaatattggcaacctagaattctttgtgagattgttggggttatt 3090803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 7065025 - 7065073
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcaca 227  Q
    ||||||||||||||||  || ||||||||||||| ||||| ||||||||    
T  7065025 ctataaatattcaaaattttgtttttagtctctacaaaataaaatcaca 7065073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 10066178 - 10066230
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcacatttt 231  Q
    ||||||||||||| ||  |||||||||||| ||| ||||| ||||||||||||    
T  10066178 ctataaatattcacaattttatttttagtccctacaaaataaaatcacatttt 10066230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 14091279 - 14091227
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcacatttt 231  Q
    ||||||||||||| ||  |||||||||||| ||| ||||| ||||||||||||    
T  14091279 ctataaatattcagaattttatttttagtccctacaaaataaaatcacatttt 14091227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 26674852 - 26674804
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcaca 227  Q
    ||||||||||||| ||  |||||||||||||||| ||||| ||||||||    
T  26674852 ctataaatattcagaattttatttttagtctctacaaaataaaatcaca 26674804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 421
Target Start/End: Complemental strand, 29171094 - 29170958
Alignment:
Q  285 gttttcattatcttcctttagaatattggcaacctagaatttcatttgagattgttggggctattggcacgcctataattattgattagcacacattaaa 384  Q
    ||||||||||||| |||   || ||||||||||||| || || ||||||||||| ||| |||| ||| || |||||||  |||||| || ||||   |||    
T  29171094 gttttcattatctccctcaggagtattggcaacctataactttatttgagattgatggagctactggtactcctataacgattgatgagaacactagaaa 29170995  T
Q  385 ccaaacatttggtcattatgcacgcgttctagttgat 421  Q
    |||  |||||||||||||||| || || |||||||||    
T  29170994 ccatgcatttggtcattatgcgcgggtgctagttgat 29170958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 363
Target Start/End: Original strand, 49046245 - 49046348
Alignment:
Q  260 caaactcatagccaggtatgggtttgttttcattatcttcctttagaatattggcaacctagaatttcatttgagattgttggggctattggcacgccta 359  Q
    ||||| ||||| ||| ||||||| ||||||||||||||||| || |||||||||||   ||||||    |||||||||| || ||||||||| || ||||    
T  49046245 caaacccatagtcagatatgggtatgttttcattatcttccattggaatattggcatgatagaatcctttttgagattgatgaggctattggtaccccta 49046344  T
Q  360 taat 363  Q
    ||||    
T  49046345 taat 49046348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 40081922 - 40081870
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcacatttt 231  Q
    ||||||||||||| ||  |||||||||||| ||| ||||| ||||||||||||    
T  40081922 ctataaatattcagaattttatttttagtccctacaaaataaaatcacatttt 40081870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 43073126 - 43073074
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcacatttt 231  Q
    ||||||||||||| ||  || ||||||||| ||||||||| ||||||||||||    
T  43073126 ctataaatattcacaattttgtttttagtccctataaaataaaatcacatttt 43073074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 360
Target Start/End: Original strand, 42295392 - 42295492
Alignment:
Q  260 caaactcatagccaggtatgggtttgttttcattatcttcctttagaatattggcaacctagaatttc-atttgagattgttggggctattggcacgcct 358  Q
    ||||||||||| || ||||||||| |||| |||||||| ||| |||| |||||||| |||| |||| |  |||||||||| |||||||||||| || |||    
T  42295392 caaactcatagtcaagtatgggttcgtttccattatctccctctagagtattggcacccta-aattcctttttgagattgctggggctattggtacacct 42295490  T
Q  359 at 360  Q
    ||    
T  42295491 at 42295492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 40858653 - 40858686
Alignment:
Q  117 tttaaaataaatttagtgttattgaagtattata 150  Q
    |||||||||||||||||||| |||||||||||||    
T  40858653 tttaaaataaatttagtgtttttgaagtattata 40858686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 51819281 - 51819248
Alignment:
Q  117 tttaaaataaatttagtgttattgaagtattata 150  Q
    ||||||||||||||||||| ||||||||||||||    
T  51819281 tttaaaataaatttagtgtgattgaagtattata 51819248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 16318 - 16370
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcacatttt 231  Q
    ||||||||||||| ||  || ||||||||| ||||||||| ||||||||||||    
T  16318 ctataaatattcagaattttgtttttagtccctataaaataaaatcacatttt 16370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 12955362 - 12955310
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcacatttt 231  Q
    ||||||||||||| ||  || ||||||||||||||||||| |||| |||||||    
T  12955362 ctataaatattcagaattttgtttttagtctctataaaataaaataacatttt 12955310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 17075339 - 17075387
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcaca 227  Q
    ||||||||||||||||  |||||||||||| ||| ||||| ||||||||    
T  17075339 ctataaatattcaaaattttatttttagtccctacaaaataaaatcaca 17075387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 17572931 - 17572883
Alignment:
Q  179 ctataaatattcaaaaccttatttttagtctctataaaattaaatcaca 227  Q
    ||||||||||||||||  |||||||||||| ||| ||||| ||||||||    
T  17572931 ctataaatattcaaaattttatttttagtccctacaaaataaaatcaca 17572883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University