View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_14 (Length: 425)
Name: NF19312_low_14
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 33399022 - 33399430
Alignment:
| Q |
1 |
gtaacaccagtacacaattttctttgatatcaaataattcaacatgattttattattggacaggaaaacaaatgcaaaccccattgtaagaaattcagga |
100 |
Q |
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| T |
33399022 |
gtaacaccagtacacaattttctttgatatcaaataattcaacatgattttattattggacaggaaaacaaatgcaa-ccccattgtaagaaattcagga |
33399120 |
T |
|
| Q |
101 |
agagctataagatcagatttgaaatcatcactaggaaacgtgtgattctttttatttatgtgtgtaaataaattcaccaacataaagaaaataaataatt |
200 |
Q |
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| T |
33399121 |
agagctataagatcagatttgaaatcatcactaggaaacgtgtgattctttttatttatgtgtgtaaataaattcaccaacataaagaaaataaataatt |
33399220 |
T |
|
| Q |
201 |
aatgattttagtcactagaaaaaatagccccactttgaaacatgacacatgaactaatccaatctcaaacagttatcagattcctgtgaatcgttttgaa |
300 |
Q |
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| T |
33399221 |
aatgattttagtaactagaaaaaatagccccactttgaaacatgacacatgaactaatccaatctcaaacagttatcagattcctgtgaatcgttttgaa |
33399320 |
T |
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| Q |
301 |
tagcttcttttgcagcagggaccgtcggggagcggtccatggtgcatttgaaggcggtgctgcttgaggggccggtgtaggtgagggtacaggagaccaa |
400 |
Q |
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| T |
33399321 |
tagctacttttgcagcagggaccggcggggagcggtccatggtgcatttgaaggtggtgctgcttgaggggccggtgtaggtgagggtacaggagaccaa |
33399420 |
T |
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| Q |
401 |
tttatctctg |
410 |
Q |
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| T |
33399421 |
tttatctctg |
33399430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 258 - 410
Target Start/End: Original strand, 33395394 - 33395546
Alignment:
| Q |
258 |
tccaatctcaaacagttatcagattcctgtgaatcgttttgaatagcttcttttgcagcagggaccgtcggggagcggtccatggtgcatttgaaggcgg |
357 |
Q |
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| T |
33395394 |
tccaatctcaaacagctatcaaatttctgtgaatcattttgaatagcttctttggcagtagggaccggcgggcagcggtccatggtgcatttgaaggcgg |
33395493 |
T |
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| Q |
358 |
tgctgcttgaggggccggtgtaggtgagggtacaggagaccaatttatctctg |
410 |
Q |
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| T |
33395494 |
tgctacttcaggggacggtgtaggtgagggcaccggagaccaagttatctctg |
33395546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 33395566 - 33395617
Alignment:
| Q |
337 |
ccatggtgcatttgaaggcggtgctgcttgaggggccggtgtaggtgagggt |
388 |
Q |
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| T |
33395566 |
ccatggtgcatttgaagacggtgctgcttcatgggccggtgtaggtgagggt |
33395617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 33399549 - 33399600
Alignment:
| Q |
337 |
ccatggtgcatttgaaggcggtgctgcttgaggggccggtgtaggtgagggt |
388 |
Q |
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| T |
33399549 |
ccatggtgcatttgaaggcggtgctgcttcaggggccggcacaggtgagggt |
33399600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 33399450 - 33399500
Alignment:
| Q |
337 |
ccatggtgcatttgaaggcggtgctgcttgaggggccggtgtaggtgaggg |
387 |
Q |
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|||||||||||||||||| ||||| |||| |||||| |||||||||||||| |
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| T |
33399450 |
ccatggtgcatttgaaggaggtgcggcttcaggggctggtgtaggtgaggg |
33399500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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