View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19312_low_17 (Length: 408)
Name: NF19312_low_17
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 38167073 - 38166721
Alignment:
| Q |
1 |
tcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaagcaacaccaactgggtttgcaagttgtcattgtccttgttgtttaagatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38167073 |
tcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaagcaacaccaactgggtttgcaagttttcattgtccttgttgtttaagatggc |
38166974 |
T |
|
| Q |
101 |
aggagtctcatgttgttgttccataggagcagtgactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38166973 |
aggagtctcatgttgttgttccataggagcagtgactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcac |
38166874 |
T |
|
| Q |
201 |
aacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38166873 |
aacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgtt |
38166774 |
T |
|
| Q |
301 |
caacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaata |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38166773 |
caacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaata |
38166721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 38172807 - 38173159
Alignment:
| Q |
1 |
tcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaagcaacaccaactgggtttgcaagttgtcattgtccttgttgtttaagatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38172807 |
tcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaagcaacaccaactgggtttgcaagttttcattgtccttgttgtttaagatggc |
38172906 |
T |
|
| Q |
101 |
aggagtctcatgttgttgttccataggagcagtgactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38172907 |
aggagtctcatgttgttgttccataggagcagtgactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcac |
38173006 |
T |
|
| Q |
201 |
aacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38173007 |
aacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgtt |
38173106 |
T |
|
| Q |
301 |
caacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaata |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38173107 |
caacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaata |
38173159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 38200031 - 38200383
Alignment:
| Q |
1 |
tcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaagcaacaccaactgggtttgcaagttgtcattgtccttgttgtttaagatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38200031 |
tcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaagcaacaccaactgggtttgcaagttttcattgtccttgttgtttaagatggc |
38200130 |
T |
|
| Q |
101 |
aggagtctcatgttgttgttccataggagcagtgactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38200131 |
aggagtctcatgttgttgttccataggagcagtgactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcac |
38200230 |
T |
|
| Q |
201 |
aacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38200231 |
aacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgtt |
38200330 |
T |
|
| Q |
301 |
caacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaata |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38200331 |
caacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaata |
38200383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 192 - 346
Target Start/End: Complemental strand, 11491603 - 11491452
Alignment:
| Q |
192 |
agcaagcacaacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||||||||||| |
|
|
| T |
11491603 |
agcaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactttgttgctcgactgaaggaatctcat |
11491504 |
T |
|
| Q |
292 |
ctcgctgttcaacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtc |
346 |
Q |
| |
|
|| ||||||||||||| ||| || | |||| |||||||||||||||||||||| |
|
|
| T |
11491503 |
ct---tgttcaacagcgagagtgactagtgtgccattcttgtttaaggttgtgtc |
11491452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11484831 - 11484783
Alignment:
| Q |
1 |
tcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaag |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
11484831 |
tcttctcaagtttgttcatatcaggaagtgcagtaccgattggataaag |
11484783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11590252 - 11590196
Alignment:
| Q |
1 |
tcttctcaagtttgttcatatcaggaagtgtagaaccgattggataaagcaacacca |
57 |
Q |
| |
|
|||| |||||||| |||||| ||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
11590252 |
tcttttcaagtttcttcataacaggaggtgtagtaccgattggataaagtaacacca |
11590196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 11484655 - 11484599
Alignment:
| Q |
297 |
tgttcaacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaata |
353 |
Q |
| |
|
||||||| || |||||| || | ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
11484655 |
tgttcaagagggacagtgactattgtgtcattattgtttaaggttatgtcgtgaata |
11484599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University