View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_21 (Length: 375)
Name: NF19312_low_21
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 363
Target Start/End: Complemental strand, 48635722 - 48635355
Alignment:
| Q |
6 |
atttttatgctcacctttgatacttttctaataaatcttttgatattatatatccaccttgatttcattgacaatacaagtaagaccaaggacactattt |
105 |
Q |
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| T |
48635722 |
atttttatgctcacctttgatacttttctaataaatcttttgatattatatatccaccttgatttcattgacaatacaagtaagaccaaggacactattt |
48635623 |
T |
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| Q |
106 |
tattgcattattaagttaaattaacaacattcactccccctccctcccttccaacttaatttgcaaatctctctttttgccttagttttcgagcctcccc |
205 |
Q |
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| T |
48635622 |
tattgcattattaagttaaattaacaacattcactccccctccctcccttccaacttaatttgcaaatctctttttttgccttagttttcgagcctcccc |
48635523 |
T |
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| Q |
206 |
acccacacgtacgttaacttgctatacgctacgttcaattccattccgtgcaactttcaccttaatata----------tatagattagtccagctcctc |
295 |
Q |
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|||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
48635522 |
acccacacgtacgttaacttcctatacactacattccattccattccgtgcaactttcaccttaatatatatatatatatatagattagtccatctcctc |
48635423 |
T |
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| Q |
296 |
tacatactcgnnnnnnnnnnnnnngggtgataattggcctttgaagaacagtactagttttcaatatt |
363 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48635422 |
tacatacttgttttttctttttttgggtgataattggcctttgaagaacagtactagttttcaatatt |
48635355 |
T |
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