View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19312_low_26 (Length: 313)

Name: NF19312_low_26
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19312_low_26
NF19312_low_26
[»] chr2 (5 HSPs)
chr2 (1-297)||(9611374-9611673)
chr2 (236-298)||(16717647-16717709)
chr2 (251-297)||(8798397-8798443)
chr2 (231-297)||(27504338-27504404)
chr2 (236-270)||(35312169-35312203)
[»] scaffold0111 (1 HSPs)
scaffold0111 (229-297)||(38944-39012)
[»] chr8 (1 HSPs)
chr8 (236-297)||(22209445-22209506)
[»] chr1 (1 HSPs)
chr1 (236-297)||(36621972-36622033)
[»] chr5 (1 HSPs)
chr5 (235-295)||(17098191-17098251)
[»] chr7 (1 HSPs)
chr7 (236-297)||(28733763-28733824)
[»] chr3 (1 HSPs)
chr3 (236-297)||(40392431-40392492)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 9611374 - 9611673
Alignment:
Q  1 tatagcaaactcctagtaggctactgcannnnnnnn--aaccatctgagctacatcccctggctactacatttgaacaagagtatgataaaacaaaaatt 98  Q
    ||||||||||||||||||||||||||||          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9611374 tatagcaaactcctagtaggctactgcattttttttttaaccatctgagctacatcccttggctactacatttgaacaagagtatgataaaacaaaaatt 9611473  T
Q  99 ataggaaacatgatttactagtcatcaattcttagtcattattgtgggccaatgttcacatgactttgtggagaaagagaggggaatttgttaa-nnnnn 197  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  9611474 ataggaaatatgatttactagtcatcaattcttagtcattattgtgggccaatgttcacatgactttgtggagaaagagaggggaatttgttaatttttt 9611573  T
Q  198 nnatggaaaatattaacaagtgtattcaaagtaaagatcataaatagtaaatatttataaaaatgtatataatcattgttttagaaatcaaaatatttaa 297  Q
      ||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9611574 ttatgaaaaatgttaacaagtgcatccaaagtaaagatcataaatagtaaatatttataaaaatgtatataatcattgctttagaaatcaaaatatttaa 9611673  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 16717709 - 16717647
Alignment:
Q  236 cataaatagtaaatatttataaaaatgtatataatcattgttttagaaatcaaaatatttaat 298  Q
    ||||| |||||| ||||||| |||||| ||||||||| || ||| ||||||||||||||||||    
T  16717709 cataagtagtaagtatttatgaaaatgcatataatcaatgctttggaaatcaaaatatttaat 16717647  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 8798397 - 8798443
Alignment:
Q  251 tttataaaaatgtatataatcattgttttagaaatcaaaatatttaa 297  Q
    ||||||||||| | |||||||| ||| ||||||||||||||||||||    
T  8798397 tttataaaaatatgtataatcaatgtattagaaatcaaaatatttaa 8798443  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 27504404 - 27504338
Alignment:
Q  231 aagatcataaatagtaaatatttataaaaatgtatataatcattgttttagaaatcaaaatatttaa 297  Q
    |||||||||||||||||| |||| |||||||  ||||||||| | | |||  |||||||||||||||    
T  27504404 aagatcataaatagtaaacatttttaaaaatacatataatcaatatgttaagaatcaaaatatttaa 27504338  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 35312203 - 35312169
Alignment:
Q  236 cataaatagtaaatatttataaaaatgtatataat 270  Q
    |||||||||||||||||||||||||||||| ||||    
T  35312203 cataaatagtaaatatttataaaaatgtatgtaat 35312169  T

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Target: scaffold0111 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 39012 - 38944
Alignment:
Q  229 taaagatcataaatagtaaatatttataaaaatgtatataatcattgttttagaaatcaaaatatttaa 297  Q
    |||||||||||||||||||||||||||||||||  ||  ||||| ||| ||||||||||| || |||||    
T  39012 taaagatcataaatagtaaatatttataaaaatacatgcaatcaatgtcttagaaatcaacatgtttaa 38944  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 22209506 - 22209445
Alignment:
Q  236 cataaatagtaaatatttataaaaatgtatataatcattgttttagaaatcaaaatatttaa 297  Q
    |||||||||||| ||||||| ||||| ||| |||||| ||| || |||||||||||||||||    
T  22209506 cataaatagtaagtatttatgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaa 22209445  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 36622033 - 36621972
Alignment:
Q  236 cataaatagtaaatatttataaaaatgtatataatcattgttttagaaatcaaaatatttaa 297  Q
    ||||| || ||| ||||| |||||||| || ||||||||||||| |||||||||||||||||    
T  36622033 cataagtaataagtatttttaaaaatgcatgtaatcattgttttggaaatcaaaatatttaa 36621972  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 17098191 - 17098251
Alignment:
Q  235 tcataaatagtaaatatttataaaaatgtatataatcattgttttagaaatcaaaatattt 295  Q
    |||||||||||| |||||| |||||||| || |||||||||| || |||||| ||||||||    
T  17098191 tcataaatagtagatatttttaaaaatgaatgtaatcattgtcttggaaatcgaaatattt 17098251  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 28733763 - 28733824
Alignment:
Q  236 cataaatagtaaatatttataaaaatgtatataatcattgttttagaaatcaaaatatttaa 297  Q
    ||||||||| |||||||| |||||||| || ||||||||||  | ||| |||||||||||||    
T  28733763 cataaatagaaaatatttttaaaaatgcatgtaatcattgtcatggaattcaaaatatttaa 28733824  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 40392492 - 40392431
Alignment:
Q  236 cataaatagtaaatatttataaaaatgtatataatcattgttttagaaatcaaaatatttaa 297  Q
    ||||| |||||||||||||| ||||| ||| |||||| ||  |||||||| |||||||||||    
T  40392492 cataagtagtaaatatttatgaaaatatatgtaatcaatgcattagaaataaaaatatttaa 40392431  T

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