View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_3 (Length: 656)
Name: NF19312_low_3
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 193 - 639
Target Start/End: Complemental strand, 25527819 - 25527373
Alignment:
| Q |
193 |
aacaagcagcaacggcggagccccagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccat |
292 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527819 |
aacaagcagcaacggcggagcctcagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccat |
25527720 |
T |
|
| Q |
293 |
ggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagct |
392 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527719 |
ggcccgccagtcggcgttctcagcaacgaatcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagct |
25527620 |
T |
|
| Q |
393 |
cttgatttgcacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattg |
492 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527619 |
cttgatttgtacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattg |
25527520 |
T |
|
| Q |
493 |
atgcggccctcgatgtttttcggaaaatgaaggctgatgcatctatcaaaccctcactggttacctatcagattatcaccaaatgtatgatcaatgctgg |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527519 |
atgcggccctcgatgtttttcggaaaatgaaggctgatgcatctatcaaaccctcactggttacctatcagattatcaccaaatgtatgatcaatgctgg |
25527420 |
T |
|
| Q |
593 |
tcgtattgaggacgccagtgacatttggtttgagatgttattagact |
639 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527419 |
tcgtattgaggacgccagtgacatttggtttgagatgttattagact |
25527373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 257 - 633
Target Start/End: Original strand, 25514657 - 25515033
Alignment:
| Q |
257 |
gattcgctccggcaacctcgacgctgcctctgccatggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatc |
356 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514657 |
gattcgctccggcaacctcaacgctgcctctgccatggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatc |
25514756 |
T |
|
| Q |
357 |
ggtgccatgcaccgcgcaaaaagacacaacgaagctcttgatttgcacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataact |
456 |
Q |
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|||||||||| || |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||| |
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| T |
25514757 |
ggtgccatgctccacgcaaaaagacacaaccaagctcttgatttgtacgagttcttctttaacttgtttaaaattgttcctaacattgtctctcataact |
25514856 |
T |
|
| Q |
457 |
ttatgatcaacgcatattgtgatgagggctgcattgatgcggccctcgatgtttttcggaaaatgaaggctgatgcatctatcaaaccctcactggttac |
556 |
Q |
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|| | ||||| || ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
25514857 |
ttgttatcaatgcctattgtgatgagggccgcattgacgcggctctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcaccggttac |
25514956 |
T |
|
| Q |
557 |
ctatcagattatcaccaaatgtatgatcaatgctggtcgtattgaggacgccagtgacatttggtttgagatgttat |
633 |
Q |
| |
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||||||||||||||||||| | |||||| ||||||||||||||| || ||| ||||||| | |||| ||||||||| |
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| T |
25514957 |
ctatcagattatcaccaaagctttgatcagtgctggtcgtattgaagatgcccgtgacatcttgtttaagatgttat |
25515033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 200 - 633
Target Start/End: Complemental strand, 25535841 - 25535408
Alignment:
| Q |
200 |
agcaacggcggagccccagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccatggcccgc |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25535841 |
agcaacggcggagccccagcctcctcctgaagaactccacacgcgcgtcagatcgttgattcgctccggcaacctcgacgctgcctctgccatggcccgc |
25535742 |
T |
|
| Q |
300 |
cagtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagctcttgatt |
399 |
Q |
| |
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|||||| ||||||||||||| |||||||| || |||||||||||||| || ||||| | ||| |||||||| || |||||| |||| ||||||||||||| |
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| T |
25535741 |
cagtcgacgttctcagcaacaactcgtccaactgtgttcacctgcaatgctatcattgctgcaatgcaccgtgcgaaaagatacaatgaagctcttgatt |
25535642 |
T |
|
| Q |
400 |
tgcacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattgatgcggc |
499 |
Q |
| |
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|| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||| || ||||||||||||||| ||||||| ||||| |
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| T |
25535641 |
tgtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcttattgtgatgagggccgcattgacgcggc |
25535542 |
T |
|
| Q |
500 |
cctcgatgtttttcggaaaatgaaggctgatgcatctatcaaaccctcactggttacctatcagattatcaccaaatgtatgatcaatgctggtcgtatt |
599 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || | ||||||||||||||| |||||| ||||||||||||| |
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| T |
25535541 |
tctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcacccgttacttaccgcattatcaccaaatgtttgatcagtgctggtcgtatt |
25535442 |
T |
|
| Q |
600 |
gaggacgccagtgacatttggtttgagatgttat |
633 |
Q |
| |
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||||| ||| ||||||| | | || ||||||||| |
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| T |
25535441 |
gaggatgcccgtgacatcttggttaagatgttat |
25535408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 25527996 - 25527879
Alignment:
| Q |
16 |
ctgctgggggtagtatatataagaagaaagatgttagaagaattcatttcattttcatttcaaattagaaagtacgaaattttagggtttcaaactcaac |
115 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25527996 |
ctgctggtggtagtatatataagaagaaagatgttagaagaattcatttcattttcatttcaaaatagaaagtacgaaattttagggtttcaaactcaac |
25527897 |
T |
|
| Q |
116 |
aatgtcactctgtcgcca |
133 |
Q |
| |
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||||||||||| |||||| |
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| T |
25527896 |
aatgtcactctttcgcca |
25527879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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