View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_32 (Length: 275)
Name: NF19312_low_32
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_32 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 4702212 - 4701964
Alignment:
| Q |
27 |
gtgttggtgttgtgttcggtgtctctactttattacgcaatgcaatgaataatttaaccttggtgtcaagcatgatggaaataactctatcttgaaactg |
126 |
Q |
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| T |
4702212 |
gtgtcggtgttgtgttcggtgtctctgctttattacgcaatgcaatgaataatttaaccttggtgtcaagcatgatggaaataactctatcttgaaactg |
4702113 |
T |
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| Q |
127 |
agaattgtattgtttaacaaaatcaatagttttctgatgggaagtgtggtccccgtgtgacatgttcaagcgggccacattcattccagtttcagccagt |
226 |
Q |
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| T |
4702112 |
agaattgtattgtttaacaaaatcaatagctttctgatgggaagtgtggtccccgtgtgacatgttcaaacgcgccacattcattccagtttcagccagt |
4702013 |
T |
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| Q |
227 |
ttccaaatcatgtcacgtgagctagtagatggaccaatcgtgcacacga |
275 |
Q |
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| T |
4702012 |
ttccaaatcatgtcacgtgagctagtagatggaccaatcgtgcacacga |
4701964 |
T |
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