View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_39 (Length: 252)
Name: NF19312_low_39
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_39 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 26276135 - 26276369
Alignment:
| Q |
18 |
ataaatggcttcaatctgacctagctaagattgataggaagagaacaccttgggtgattgccttggtacatgcaccttggtataatactaatgaggcaca |
117 |
Q |
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| T |
26276135 |
ataaatggcttcaatctgacctagctaagattgataggaagagaacaccttgggtgattgccttggtacatgcaccttggtataatactaatgaggcaca |
26276234 |
T |
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| Q |
118 |
tgaaggtgaaggtgaagaaatgagacaggccatggaagatttgctttatgaggctcatgttgacttggttttttcagggcatgtccatgcatacgaacgc |
217 |
Q |
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| T |
26276235 |
tgaaggtgaaggtgaagaaatgagacaggccatggaagaattgctttatgaggctcgtgttgacttggttttttcagggcatgtccatgcatacgaacgc |
26276334 |
T |
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| Q |
218 |
tttgtatgtcatattaatattcatcatgccacgat |
252 |
Q |
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| T |
26276335 |
tttgtatgtcatattaatattcatcatgccacgat |
26276369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 42274122 - 42273916
Alignment:
| Q |
23 |
tggcttcaatctgacctagctaagattgataggaagagaacaccttgggtgattgccttggtacatgcaccttggtataatactaatgaggcacatgaag |
122 |
Q |
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| T |
42274122 |
tggcttcaattagaccttactaagattgatagggtgaagacaccttgggttattacaatggttcatgcaccttggtatactactaatgaggcacatcaag |
42274023 |
T |
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| Q |
123 |
gtgaaggtgaagaaatgagacaggccatggaagatttgctttatgaggctcatgttgacttggttttttcagggcatgtccatgcatacgaacgctttgt |
222 |
Q |
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| T |
42274022 |
gtgaaggtgaatccatgagacaagctatggaagagttgctttttaaggctcgtgttgatttggtttttgctggacatgttcatgcgtatgaacgatttgt |
42273923 |
T |
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| Q |
223 |
atgtcat |
229 |
Q |
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| T |
42273922 |
atgtcat |
42273916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 42292842 - 42292880
Alignment:
| Q |
185 |
gttttttcagggcatgtccatgcatacgaacgctttgta |
223 |
Q |
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| T |
42292842 |
gtttttacagggcatgttcatgcatacgaacgctttgta |
42292880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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