View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_42 (Length: 240)
Name: NF19312_low_42
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_42 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 26374332 - 26374108
Alignment:
| Q |
16 |
agacattctcagaagttctcaattcatctctatcttcaactttacaacgcaagatatcagaaggagcagtcttagtcttaacctcatctttaatattctc |
115 |
Q |
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| T |
26374332 |
agacattttcagaagttctcaattcatctttatcttcaactttacaacgcaagatatcagaaggagcagtcttagtcttaacctcatctttaatattctc |
26374233 |
T |
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| Q |
116 |
ataagttttcatctttatctttgtcttttttatctgctgaggcattttatttgtctcaagatgtagattattgtcggtctttttagcccccttcttatta |
215 |
Q |
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| T |
26374232 |
ataagttttcatctttatctttgtcttttttatctgctgaggcattttatttgtctcaagatgtagattattgccggtctttttagcccccttcttatta |
26374133 |
T |
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| Q |
216 |
aagaaccgctccactgcagaacacc |
240 |
Q |
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| T |
26374132 |
aagaacagctccactgcagaacacc |
26374108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 26374482 - 26374397
Alignment:
| Q |
16 |
agacattctcagaagttctcaattcatctctatc------ttcaactttacaacgcaagatatcagaaggagcagtcttagtctta |
95 |
Q |
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| T |
26374482 |
agacattctcagaagttctcaattcatctttatctttattttcaccattccaacgcatgatatcagaaggagcagtcttactctta |
26374397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 40767268 - 40767391
Alignment:
| Q |
16 |
agacattctcagaagttctcaattcatctctatcttcaactttacaacgcaagatatcagaaggagcagtcttagtcttaacctc------atctttaat |
109 |
Q |
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| T |
40767268 |
agacattctcagaagttatcaattcatctttatcttcaactttccaacgcaagatgtcagacggagcagttttagtcttaacctcgtttttatctttaat |
40767367 |
T |
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| Q |
110 |
attctcataagttttcatctttat |
133 |
Q |
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| T |
40767368 |
attctcataagttctcatctttat |
40767391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 40767423 - 40767473
Alignment:
| Q |
190 |
cggtctttttagcccccttcttattaaagaaccgctccactgcagaacacc |
240 |
Q |
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| T |
40767423 |
cggtctttttatcccccttcatattagagaaccgatccactgctgaacacc |
40767473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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