View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_43 (Length: 238)
Name: NF19312_low_43
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_43 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 35603661 - 35603441
Alignment:
| Q |
18 |
actactctatcaatcaaccattttttatttgttgatgataatttccnnnnnnnnacaaagccaatactttgaaagctcaaagtttcaaagacatatattt |
117 |
Q |
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| T |
35603661 |
actactctatcaatcaaccattttttatttgttgatgataatttccttttttttacaaagccaatactttgaaagctcaaagtttcaaagacatatattt |
35603562 |
T |
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| Q |
118 |
tcaccatgagcatgcatttaatcaggtcatacattttggaaaatccgacattgcttcaacaaggacacatcctacgaaactatttccctctcttggtgtt |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35603561 |
tcaccatgagcatgcatttaatcaggccatacattttggaaaatccgacattgcttcagcaaggacacatcctacgaaactatttccctctcttggtgtt |
35603462 |
T |
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| Q |
218 |
gctggtaatattggtagccaa |
238 |
Q |
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| T |
35603461 |
gttggtaatattggtagccaa |
35603441 |
T |
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