View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_45 (Length: 220)
Name: NF19312_low_45
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 3856759 - 3856940
Alignment:
| Q |
17 |
ataattctagtgcttcattcaagaatttatacaccataatacaggttgttgatgttgatgaataaaaatattttaaatagcatgaagttaattatcttat |
116 |
Q |
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| T |
3856759 |
ataattctagtgcttcattcaagaatttatacaccataatacaggttgttgatggtgatgaataaaaatattttaaatagcatgaagtta----tcttat |
3856854 |
T |
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| Q |
117 |
ttatattcaactaatattaattcattctttcagtcggtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
202 |
Q |
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| T |
3856855 |
ttatattcaactaacattaattcattctttcagtcggtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
3856940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 3865516 - 3865697
Alignment:
| Q |
17 |
ataattctagtgcttcattcaagaatttatacaccataatacaggttgttgatgttgatgaataaaaatattttaaatagcatgaagttaattatcttat |
116 |
Q |
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| T |
3865516 |
ataattctagtgcttcattcaagaatttatacaccataatacaggttgttgatggtgatgaataaaaatattttaaatagcatgaagtta----tcttat |
3865611 |
T |
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| Q |
117 |
ttatattcaactaatattaattcattctttcagtcggtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
202 |
Q |
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| T |
3865612 |
ttatattcaactaacattaattcattctttcagtcggtgcaacaagatgaagaactgaaagcttttcagaaaacacactcccagaa |
3865697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 5441092 - 5440930
Alignment:
| Q |
25 |
agtgcttcattcaagaatttatacaccataatacaggttgttgatgttgatgaataaaaatattttaaatagcatgaagttaattatcttatttatattc |
124 |
Q |
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| T |
5441092 |
agtgcttcattcaagaatttatacaccatagtacaggttgttaatgtcgacgaataaaaatattttaaatagtat-aaatta---atcctatttatattc |
5440997 |
T |
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| Q |
125 |
aactaatattaattcattctttcagtcggtgcaacaagatgaagaactgaaagcttttcagaaaaca |
191 |
Q |
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|||||| |||| | |||| ||| |||||||||| | || ||||||||| ||||||||||| |||||| |
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| T |
5440996 |
aactaacattagtgcatttttttagtcggtgcagcgaggtgaagaactaaaagcttttcaaaaaaca |
5440930 |
T |
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