View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19312_low_5 (Length: 599)

Name: NF19312_low_5
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19312_low_5
NF19312_low_5
[»] chr8 (5 HSPs)
chr8 (225-583)||(10382419-10382775)
chr8 (246-583)||(9484308-9484641)
chr8 (7-223)||(10382813-10383021)
chr8 (327-374)||(9484854-9484902)
chr8 (327-374)||(10382158-10382206)
[»] chr4 (1 HSPs)
chr4 (327-583)||(52720999-52721234)
[»] chr3 (3 HSPs)
chr3 (395-449)||(46993711-46993765)
chr3 (247-365)||(41639026-41639141)
chr3 (327-365)||(46993441-46993479)
[»] chr5 (6 HSPs)
chr5 (327-383)||(3136044-3136101)
chr5 (257-374)||(25074914-25075029)
chr5 (257-374)||(25132883-25132998)
chr5 (327-365)||(3136427-3136465)
chr5 (327-374)||(25074404-25074452)
chr5 (327-374)||(25132373-25132421)
[»] chr6 (2 HSPs)
chr6 (259-374)||(2038652-2038765)
chr6 (328-381)||(1018687-1018741)
[»] chr1 (1 HSPs)
chr1 (261-318)||(43737787-43737844)
[»] chr2 (2 HSPs)
chr2 (259-299)||(9371014-9371054)
chr2 (261-317)||(14573319-14573374)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 225 - 583
Target Start/End: Complemental strand, 10382775 - 10382419
Alignment:
Q  225 tataaagcatttccactgtggaaaaatttaccttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnn 324  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||| |||||||||| | | ||||||||||||||| | |||| |||||||||||         
T  10382775 tataaagcatttctactatggaaaaatttaccttagtcattagatcaaatgaagaacacagttttatcgtacacttcc-aacattagattatttcttttt 10382677  T
Q  325 nncaccttcaaccacccttctctctccttcctccccaccacagcaacatcaaacaacctttaaaaatttcataagctgtaaaaattgatcttatacttct 424  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  10382676 t-caccttcaaccacccttctctctccttcctccccaccacagcaacatcaaacaacctttaaaaattccataagctgtaaaaattgatattatacttct 10382578  T
Q  425 tgattaaaaaatcaagagacccatctgatggtgattacatttaatttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtg 524  Q
    |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10382577 tgattaaaaaatgaagagacccatatggtggtgattacatttaatttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtg 10382478  T
Q  525 tgcttttgtgtactgtgttggtgttttatagaagagatgtgactaatcagtgtatataa 583  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||    
T  10382477 tgcttttgtgtactgtgttggtgttttataggagagatatgactaatcactgtatataa 10382419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 246 - 583
Target Start/End: Original strand, 9484308 - 9484641
Alignment:
Q  246 aaaaatttaccttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttct 345  Q
    |||||||||| ||| |||||| ||||||||||||| | | ||||||| ||||||||| || |||||||||||||       |||||||||||||||||||    
T  9484308 aaaaatttactttaaccattaaattaaatgaagaacacagttttatcatacactttc-aatactagattatttctttttc-caccttcaaccacccttct 9484405  T
Q  346 ctctccttcctccccaccacagcaacatcaaacaacctttaaaaatttcataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacc 445  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9484406 ctctccttcctccccaccacagcaacatcaaacaacatgtaaaaattctataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacc 9484505  T
Q  446 catctgatggtgattacatttaatttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtgtgcttttgtgtactgtgttgg 545  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||| |||||||||||| |||  ||||||||||||||    
T  9484506 catctggtggtgattacatttaatttaatttgttaaactattacatgctta--tgatggtctcactcatgtccaatgtgtacttcagtgtactgtgttgg 9484603  T
Q  546 tgttttatagaagagatgtgactaatcagtgtatataa 583  Q
    |||||||||| |||||| |||||||||| |||||||||    
T  9484604 tgttttataggagagatatgactaatcactgtatataa 9484641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 10383021 - 10382813
Alignment:
Q  7 gtgggtagattattctgtgtgtgctctattattgtggaaaaggaaaagctatatggaatgtgggaatggtataggatgtttgatttgagaattttgcata 106  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||||||| |||||||||||        ||||||||||||||||||||||||||||||||    
T  10383021 gtgggtatattattatgtgtgtgcgctattattgtggaaaaggaaaagatatatggaatg--------gtataggatgtttgatttgagaattttgcata 10382930  T
Q  107 tgatggtgtctaaaaagaaaagaattttggatatgatagtgtacatggatggatggctattatatgttctaccaaaaaagaatatttgcttagctcaatt 206  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10382929 tgatgttgtctaaaaagaaaagaattttggatatgatagtgtacatggatggatggctattatatgttctaccaaaaaagaatatttgcttagctcaatt 10382830  T
Q  207 cacaattctcatgctag 223  Q
    |||||||||||||||||    
T  10382829 cacaattctcatgctag 10382813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 9484902 - 9484854
Alignment:
Q  327 caccttcaaccacccttctctctccttcctccccacca-cagcaacatc 374  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||||||    
T  9484902 caccttccaccactcttctctctccttcctccccaccaccagcaacatc 9484854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 10382158 - 10382206
Alignment:
Q  327 caccttcaaccacccttctctctccttcctccccacca-cagcaacatc 374  Q
    ||||||| ||||| |||||||||||||||||||||| | ||||||||||    
T  10382158 caccttccaccactcttctctctccttcctccccactaccagcaacatc 10382206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 327 - 583
Target Start/End: Complemental strand, 52721234 - 52720999
Alignment:
Q  327 caccttcaaccacccttctctctccttcctccccaccacagcaacatcaaacaacctttaaaaatttcataagctgtaaaaattgatcttatacttcttg 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  52721234 caccttcaaccacccttctctctccttcctccccaccacagcaacatcaaacaacccgtaaaaattccataagctgtaaaaattgatcttatacttcttg 52721135  T
Q  427 attaaaaaatcaagagacccatctgatggtgattacatttaatttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtgtg 526  Q
    ||||||||||||||||||||                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52721134 attaaaaaatcaagagaccc---------------------atttaatttgttaaactattacatgcttatgtgttggtctcactcgtgtccaatgtgtg 52721056  T
Q  527 cttttgtgtactgtgttggtgttttatagaagagatgtgactaatcagtgtatataa 583  Q
    ||| ||||||||||||||||||||||||| |||||| |||||||||| |||||||||    
T  52721055 cttctgtgtactgtgttggtgttttataggagagatatgactaatcactgtatataa 52720999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 395 - 449
Target Start/End: Original strand, 46993711 - 46993765
Alignment:
Q  395 ataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacccatc 449  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  46993711 ataagctgtaaaaattgatcttatccttcttgattaaaaaatcaagtgacccatc 46993765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 365
Target Start/End: Complemental strand, 41639141 - 41639026
Alignment:
Q  247 aaaatttaccttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctc 346  Q
    ||||||||  |||||||||||||||| |  |||| | ||| |||| |||||||| ||||||||||||||||||       ||||||| ||||||||||||    
T  41639141 aaaatttattttagccattagattaatttgagaacacaatcttatggtacactt-ctaacactagattatttctttta--caccttccaccacccttctc 41639045  T
Q  347 tctccttcctccccaccac 365  Q
    |||||||||||||||||||    
T  41639044 tctccttcctccccaccac 41639026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 46993441 - 46993479
Alignment:
Q  327 caccttcaaccacccttctctctccttcctccccaccac 365  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  46993441 caccttccaccacccttttctctccttcctccccaccac 46993479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 3136044 - 3136101
Alignment:
Q  327 caccttcaaccacccttctctctccttcctccccacca-cagcaacatcaaacaacct 383  Q
    ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  3136044 caccttccaccacccttctctctccttcctccccaccaccaccaacatcaaacaacct 3136101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 257 - 374
Target Start/End: Complemental strand, 25075029 - 25074914
Alignment:
Q  257 ttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctctctccttcct 356  Q
    |||||||||||||||| ||||||| | |||  ||| |||||||||| ||||||||||||||||       ||||||| |||||| |||||||| ||||||    
T  25075029 ttagccattagattaattgaagaacacaatcatatggtacactttc-aacactagattatttc--ttttacaccttccaccaccattctctcttcttcct 25074933  T
Q  357 ccccacca-cagcaacatc 374  Q
    |||||||| ||||||||||    
T  25074932 ccccaccaccagcaacatc 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 257 - 374
Target Start/End: Complemental strand, 25132998 - 25132883
Alignment:
Q  257 ttagccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctctctccttcct 356  Q
    |||||||||||||||| ||||||| | |||  ||| |||||||||| ||||||||||||||||       ||||||| |||||| |||||||| ||||||    
T  25132998 ttagccattagattaattgaagaacacaatcatatggtacactttc-aacactagattatttc--ttttacaccttccaccaccattctctcttcttcct 25132902  T
Q  357 ccccacca-cagcaacatc 374  Q
    |||||||| ||||||||||    
T  25132901 ccccaccaccagcaacatc 25132883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 3136465 - 3136427
Alignment:
Q  327 caccttcaaccacccttctctctccttcctccccaccac 365  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  3136465 caccttccaccacctttctctctccttcctccccaccac 3136427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 25074404 - 25074452
Alignment:
Q  327 caccttcaaccacccttctctctccttcctccccacca-cagcaacatc 374  Q
    ||||||| |||||| |||||||||||||||| |||||| ||||||||||    
T  25074404 caccttccaccaccattctctctccttcctctccaccatcagcaacatc 25074452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 25132373 - 25132421
Alignment:
Q  327 caccttcaaccacccttctctctccttcctccccacca-cagcaacatc 374  Q
    ||||||| |||||| |||||||||||||||| |||||| ||||||||||    
T  25132373 caccttccaccaccattctctctccttcctctccaccatcagcaacatc 25132421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 374
Target Start/End: Original strand, 2038652 - 2038765
Alignment:
Q  259 agccattagattaaatgaagaatataattttatcgtacactttctaacactagattatttcnnnnnnncaccttcaaccacccttctctctccttcctcc 358  Q
    |||||||||||||| ||||||||| |||  ||| ||||| |||| || |||||||||||||       ||||||| |||||| |||||||| ||||||||    
T  2038652 agccattagattaattgaagaatacaatcatatggtacattttc-aatactagattatttctttta--caccttccaccaccattctctcttcttcctcc 2038748  T
Q  359 ccacca-cagcaacatc 374  Q
    |||||| ||||||||||    
T  2038749 ccaccaccagcaacatc 2038765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 1018687 - 1018741
Alignment:
Q  328 accttcaaccacccttctctctccttcctccccaccac-agcaacatcaaacaac 381  Q
    |||||| ||||||||||||||||||||||| | || || ||||||||||||||||    
T  1018687 accttccaccacccttctctctccttcctcactactacaagcaacatcaaacaac 1018741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 43737787 - 43737844
Alignment:
Q  261 ccattagattaaatgaagaatataattttatcgtacactttctaacactagattattt 318  Q
    |||||||||||||||| ||||||| ||||||| ||| || || | |||||||||||||    
T  43737787 ccattagattaaatgaggaatatatttttatcatactctctcaaccactagattattt 43737844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 9371014 - 9371054
Alignment:
Q  259 agccattagattaaatgaagaatataattttatcgtacact 299  Q
    |||||||||||||||||||||| ||| ||||||| ||||||    
T  9371014 agccattagattaaatgaagaacatacttttatcatacact 9371054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 14573319 - 14573374
Alignment:
Q  261 ccattagattaaatgaagaatataattttatcgtacactttctaacactagattatt 317  Q
    |||||||||||||||| ||||||| ||||||| ||| || || ||||||||||||||    
T  14573319 ccattagattaaatgaggaatatatttttatcatactctctc-aacactagattatt 14573374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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