View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_6 (Length: 533)
Name: NF19312_low_6
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 33211437 - 33211213
Alignment:
| Q |
11 |
ataatactagaaaacaacacaatataagtacaacaaaccaaaaccaaagctaagaaagagtgttgtgttttagactttgtttgtctcatcccacttggac |
110 |
Q |
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| T |
33211437 |
ataacactagaaaacaacacaatataagtacaacaaaccaaaaccaaagctaagaaagagtgttgtgttttagactttgtttgtctcatcccacttggac |
33211338 |
T |
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| Q |
111 |
ttccacctcatccttttttcttaacgccatgaaaacaggtcagtccctattttctctcttctcttaataccaatttctgcaagatccatttttggaccta |
210 |
Q |
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| T |
33211337 |
ttccacctcatccttttttcttaacgccatgaaaacaggtcagtccctattttctctcttctcttaataccaatttctgcaagatccatttttggacctt |
33211238 |
T |
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| Q |
211 |
atcatatgcttaattagtattagta |
235 |
Q |
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| T |
33211237 |
atcatatgcttaattagtattagta |
33211213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 344 - 533
Target Start/End: Complemental strand, 33211100 - 33210912
Alignment:
| Q |
344 |
ctagaaaaggaaaaataatagttaaatgagaattttgagtttatttaagtttgtgattatggctttggagtaaagtaannnnnnnnnnnnnggcttttgg |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
33211100 |
ctagaaaaggaaaaataatagttaaatgagaattttgagtttatttaagtttgtgattattgctttggagtaaagtaattttttattttt-ggcttttgg |
33211002 |
T |
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| Q |
444 |
gtgtgttgttgtggcattctcttaatcaaaaaagaaaattaattggaggaggaattacctgtgcttaattatactttgttaggttctatt |
533 |
Q |
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| T |
33211001 |
gtgtgttgttgtggcattctcttaatcaaaaaagaaaattaattggaggaggaattacttgtgcttaattatacttgcttaggttctatt |
33210912 |
T |
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