View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19312_low_8 (Length: 504)
Name: NF19312_low_8
Description: NF19312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19312_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 14 - 494
Target Start/End: Original strand, 48672196 - 48672676
Alignment:
| Q |
14 |
caaaaccattcttgatgagcttcaaaagaatcttgaattgagtgacaagaacatggaagcttctagaatgacgctgcaccgattcggcaacacttctagt |
113 |
Q |
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| T |
48672196 |
caaaaccattcttgatgagcttcaaaagaatcttgaattgagtgacaagaacatggaagcttctagaatgacgctgcaccgattcggcaacacttctagt |
48672295 |
T |
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| Q |
114 |
agcagcatttggtatgagcttgcttatatggaagctaaggaaaaagttaaaagaggagaccgtgtttggcaacttgcttttggttctggttttaagtgta |
213 |
Q |
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| T |
48672296 |
agcagcatttggtatgagcttgcttatatggaagctaaggaaaaagttaaaagaggagaccgtgtttggcaacttgcttttggttctggttttaagtgta |
48672395 |
T |
|
| Q |
214 |
acagtgctgtttggcgttcgatgcgtcgtgttacaaaaccttcttctaggaacccttggcttgactgcattgatgcataccctgcttctctcaattaaaa |
313 |
Q |
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| T |
48672396 |
acagtgctgtttggcgttcgatgcgtcgtgttacaaaaccttcttctaggaacccttggcttgactgcattgatgcataccctgcttctctcaattaaaa |
48672495 |
T |
|
| Q |
314 |
agcacttttattattatgatcaatctatgatattgatcagtgatgatgattatgaaattaagacttatttaggatatgaaataatggtagttttagttaa |
413 |
Q |
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| T |
48672496 |
agcacttttattattatgatcaatctatgatattgatcagtgatgatgattatgaaattaagacttatttaggatatgaaataatggtagttttagttaa |
48672595 |
T |
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| Q |
414 |
gttggtgttttaaattttaattcctggcttgtgatattgcatactgttacactgaggcatatataacatcatgtgcctttg |
494 |
Q |
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| T |
48672596 |
gttggtgttttaaattttaattcctggcttgtgatattgcatactgttacactgaggcatatataacatcatgtgcctttg |
48672676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 15239657 - 15239705
Alignment:
| Q |
179 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
227 |
Q |
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| T |
15239657 |
ttggcaaattgcatttggttctggttttaagtgtaatagtgctgtttgg |
15239705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 34053356 - 34053407
Alignment:
| Q |
179 |
ttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttggcgt |
230 |
Q |
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| T |
34053356 |
ttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgt |
34053407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 19742853 - 19742804
Alignment:
| Q |
178 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
227 |
Q |
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| T |
19742853 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19742804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 19797235 - 19797284
Alignment:
| Q |
178 |
tttggcaacttgcttttggttctggttttaagtgtaacagtgctgtttgg |
227 |
Q |
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|||||||| |||| ||||| ||||| ||||||||||||| |||||||||| |
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| T |
19797235 |
tttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttgg |
19797284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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