View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19313_high_2 (Length: 547)
Name: NF19313_high_2
Description: NF19313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19313_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 30 - 529
Target Start/End: Complemental strand, 44957144 - 44956645
Alignment:
| Q |
30 |
aaccccaccagcctcatcaatccaaggaacattgagagtcaactttccatcacccagccactcaaacgccacttcagaaccattcaattgaaacttcttt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
44957144 |
aaccccaccagcctcatcaatccaaggaacattgagagtcaacttttcatcacccatccactcaaacgccacttcaaaaccattcaattgaaacttcttt |
44957045 |
T |
|
| Q |
130 |
ggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaatcaagaattgttccaccactat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44957044 |
ggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaatcaagaattgttccaccactat |
44956945 |
T |
|
| Q |
230 |
tgaacatgtttgtcactccaattggtgcaaatttgatggtgccaccaaactttttgactggaacaaaattgtatagctcaaaagtggatggttgaatgat |
329 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
44956944 |
tgaacatatttgtcaatccaattggtgcaaatttgatggtgccaccaaactttttgacttgaacaaaattgtatagctcaaatgtggatggttgaatgat |
44956845 |
T |
|
| Q |
330 |
aaattgaattgattcagaatttggagtcatcaaacaaagttcttcagcttgattgaagtagaccacatactcttctgccttacccaaatgagatgcttct |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
44956844 |
aaattgaattgattcagaatttggagtcatcaaacaaagttcttcagcttgattgaagtagaccacatactcttctgctttacccaaatgagatgcttct |
44956745 |
T |
|
| Q |
430 |
ttcttctgatcccattcaacttcagttacatgcacagtaccaactattggattgtagcattcagggaatcctctaaacttgtgctcttttgggtcccacc |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
44956744 |
ttcttctgatcccattcaacttcagttacatgcacagtaccaactattggattgtagcattcagggaatcctctaagcttgtgctcttttgggtcccacc |
44956645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 529
Target Start/End: Original strand, 43561904 - 43562424
Alignment:
| Q |
9 |
gaagaatattgccaaatcagaaaccccaccagcctcatcaatccaaggaacattgagagtcaactttccatcacccagccactcaaacgccacttcagaa |
108 |
Q |
| |
|
|||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||||| || ||||||||||| ||||||||||| |||| | |||| |
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|
| T |
43561904 |
gaagaaaattgccaaatcagaaacaccacaagcctcttcaatccaaggaacattgagagataattttccatcacctagccactcaaaatccacattagaa |
43562003 |
T |
|
| Q |
109 |
ccattcaattgaaacttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaat |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
43562004 |
ccattcagttgaaacttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatcttagcaccactttcaacatattccaaat |
43562103 |
T |
|
| Q |
209 |
caagaattgttccaccactattgaacatgtttgtcactccaattggtgcaaatttgatggtgccaccaaactttttgactggaacaaaattgtatagctc |
308 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
43562104 |
caagaattgttccaccactgttgaacatgtttgtcaatccaatgggtgcaaatttgatgttgccaccaaactttgtgactggaacaaaattgtatagctc |
43562203 |
T |
|
| Q |
309 |
aaaagtggatggttgaatgataaattgaattgattcagaatttggagtcatcaaacaaagttcttcagcttgattgaagtagaccacatactcttctgcc |
408 |
Q |
| |
|
||| |||||||||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||| |
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|
| T |
43562204 |
aaatgtggatggttgaatgataaagtgaattggttcagattttggagtcatcaaagaaagttcttgagcttgattgaagtagactgcatattcttctgcc |
43562303 |
T |
|
| Q |
409 |
ttacccaaatgagatgcttctttcttctgatcccattcaacttcagttacatgcacagtaccaactattggattgtagcattcagggaatcctctaaact |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||| ||||||| |
|
|
| T |
43562304 |
ttacccaaatgagatgcttctttcttctgattccattcaacttcagttacatgcacagtgccagttataggcttgtagcattcagggaatcccctaaact |
43562403 |
T |
|
| Q |
509 |
tgtgctcttttgggtcccacc |
529 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
43562404 |
tgtgctcttttgggtcccacc |
43562424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 9 - 529
Target Start/End: Original strand, 36429631 - 36430151
Alignment:
| Q |
9 |
gaagaatattgccaaatcagaaaccccaccagcctcatcaatccaaggaacattgagagtcaactttccatcacccagccactcaaacgccacttcagaa |
108 |
Q |
| |
|
|||||| |||||||| ||||| || |||| |||||| |||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36429631 |
gaagaaaattgccaattcagacacaccactagcctcttcaatccaagaaacattgagagacagttttccatcacccagccactcaaaagccacttcagaa |
36429730 |
T |
|
| Q |
109 |
ccattcaattgaaacttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| ||| |||||||||||| |
|
|
| T |
36429731 |
ccattcaattgaaacttctttggtgattcacttgaataagcaaggaaatttccaccacctttaacctgaatcttagcaccactctcagcatattccaaat |
36429830 |
T |
|
| Q |
209 |
caagaattgttccaccactattgaacatgtttgtcactccaattggtgcaaatttgatggtgccaccaaactttttgactggaacaaaattgtatagctc |
308 |
Q |
| |
|
| |||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||| |||| || | |||| | | ||||||||||||||||| ||| |
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|
| T |
36429831 |
ctagaactgttccaccactgttgaacatatttgtcaacccaattggtgcaaatttgatgttgccccctagctttgtaagtggaacaaaattgtataactc |
36429930 |
T |
|
| Q |
309 |
aaaagtggatggttgaatgataaattgaattgattcagaatttggagtcatcaaacaaagttcttcagcttgattgaagtagaccacatactcttctgcc |
408 |
Q |
| |
|
||| |||||||| ||||||||| | | |||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
36429931 |
aaaggtggatggctgaatgatatacttgattggttcagattttggggtcatcaaacgaagttcttcagcttgattgaagtagactacatactcttctgcc |
36430030 |
T |
|
| Q |
409 |
ttacccaaatgagatgcttctttcttctgatcccattcaacttcagttacatgcacagtaccaactattggattgtagcattcagggaatcctctaaact |
508 |
Q |
| |
|
||||||||||||||||| | |||||| ||| |||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||| |
|
|
| T |
36430031 |
ttacccaaatgagatgcctatttcttttgagcccattcaacttcagttacatgcacagttccagttattggcttgtagcattcagggaatcccctaaact |
36430130 |
T |
|
| Q |
509 |
tgtgctcttttgggtcccacc |
529 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
36430131 |
tgtgctcttttggatcccacc |
36430151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 529
Target Start/End: Complemental strand, 43977108 - 43976588
Alignment:
| Q |
9 |
gaagaatattgccaaatcagaaaccccaccagcctcatcaatccaaggaacattgagagtcaactttccatcacccagccactcaaacgccacttcagaa |
108 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||| || ||| |||||||||| || ||||||||| |||||||||||| |
|
|
| T |
43977108 |
gaagaaaattgtcaaatcagaaactccaccagcctcttcaatccaaggaacattgaaagacaattttccatcactcaaccactcaaaagccacttcagaa |
43977009 |
T |
|
| Q |
109 |
ccattcaattgaaacttctttggtgattcacttgaataagcaaggaaattcccaccacctttaaccttaatctttgcaccactttcaacatattccaaat |
208 |
Q |
| |
|
|||||||||||| |||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||| | |||| |||||||||||||||||||| |
|
|
| T |
43977008 |
ccattcaattgacacttctctggtgattcatttgaataagcaaggaaatttccaccacctttaaccttgatcatagcacaactttcaacatattccaaat |
43976909 |
T |
|
| Q |
209 |
caagaattgttccaccactattgaacatgtttgtcactccaattggtgcaaatttgatggtgccaccaaactttttgactggaacaaaattgtatagctc |
308 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||| | |||| |||| |||||||||||||||| ||| |
|
|
| T |
43976908 |
ctagaattgttccaccactgttgaacatgtttgccaatccaattggtgcaaatttgatactgccacctagctttgtgacaggaacaaaattgtataactc |
43976809 |
T |
|
| Q |
309 |
aaaagtggatggttgaatgataaattgaattgattcagaatttggagtcatcaaacaaagttcttcagcttgattgaagtagaccacatactcttctgcc |
408 |
Q |
| |
|
||| || ||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||| |
|
|
| T |
43976808 |
aaaggtagatggttgaatgataaatttgattggttcagacttcggagtcatcaaacaaagttcttcggcttgattcaagtagactacatactcttcagcc |
43976709 |
T |
|
| Q |
409 |
ttacccaaatgagatgcttctttcttctgatcccattcaacttcagttacatgcacagtaccaactattggattgtagcattcagggaatcctctaaact |
508 |
Q |
| |
|
|| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||| ||| || ||||||||||||||||| || || || |
|
|
| T |
43976708 |
ttgcccaaatgcactgcttctttcttttgatcccattcaacctcagttacatgcacagaaccagttatgggcttgtagcattcagggaagcccctgaatg |
43976609 |
T |
|
| Q |
509 |
tgtgctcttttgggtcccacc |
529 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
43976608 |
tgtgcacttttgggtcccacc |
43976588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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