View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19313_high_5 (Length: 215)
Name: NF19313_high_5
Description: NF19313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19313_high_5 |
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| [»] scaffold0191 (1 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 17302 - 17484
Alignment:
| Q |
20 |
gggtttgcgccattcgtcgtgttcgtgcttctgatggaagtgcctttttcaaatggtatctattcaattcaatgttcgttttctactttctttcttcatt |
119 |
Q |
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| T |
17302 |
gggtttgcgccattcgtcgtgttcgtgcttctgatggaagtgcctttttcaaatggtatctattcaattcaatgttcgttttctactttctttcttcatt |
17401 |
T |
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| Q |
120 |
tttagtgtttgtgcttatacttattatgattgaattgaatgtgtgtgtatgtagtgaaacatgtgggatgtctgttgctattg |
202 |
Q |
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| T |
17402 |
tttagtgtttgtgcttatacttattatgattgaattgaatgtgtgtgtatgtagtgaaacatgtgggatgtctgttgctattg |
17484 |
T |
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Target: scaffold0037 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 35661 - 35853
Alignment:
| Q |
20 |
gggtttgcgccattcgtcgtgttcgtgcttctgatggaagtgcctttttcaaatggtatctatt----caattcaatgttcgttttctactttctttctt |
115 |
Q |
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| T |
35661 |
gggtttgcgccgttcatcgtcttcgtgctcttgatggaagtgcttttttcaaatggtatgcattaattcaattcaatgttccttttcttctttctttcat |
35760 |
T |
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| Q |
116 |
c------atttttagtgtttgtgcttatacttattatgattgaattgaatgtgtgtgtatgtagtgaaacatgtgggatgtctgttgctattg |
202 |
Q |
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| T |
35761 |
tttttgtattttaaatttttgtgcttatacttaatacaattaaattgaatgtatatgtatgtagtggaacttgtggtatgtccgttgctattg |
35853 |
T |
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Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 10430126 - 10430322
Alignment:
| Q |
20 |
gggtttgcgccattcgtcgtgttcgtgcttctgatggaagtgcctttttcaaatggt----atctattcaattcaatgttcgttttctactttctttc-- |
113 |
Q |
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| T |
10430126 |
gggtttgcgccgttcatcgtcttcgtgctcttgatggaagtgcttttttcaaatggtatgcattaattcaattcaatgttccttttcttctttctttcat |
10430225 |
T |
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| Q |
114 |
----ttcatttttagtgtttgtgcttatacttattatgattgaattgaatg----tgtgtgtatgtagtgaaacatgtgggatgtctgttgctattg |
202 |
Q |
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| T |
10430226 |
tttttgtattttaaatttttgtgcttatacttaatatgattaaattgaatgtgtatgtatgtatgtagtggaacttgtggtatgtccgttgctattg |
10430322 |
T |
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