View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19313_high_7 (Length: 208)
Name: NF19313_high_7
Description: NF19313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19313_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 51532446 - 51532303
Alignment:
| Q |
17 |
aaataagtgatagcaaggccaatttaacaaggtcgtgaatatctcaggatnnnnnnnttcgggatacttatcattacccattaaagaacatcataaacca |
116 |
Q |
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| T |
51532446 |
aaataagtgatagcaaggccaatttaacaaggtcgtgaatatctcaggataaaaaaattcgggatacatatcattacccat-aaagaacatcataaacca |
51532348 |
T |
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| Q |
117 |
cacaaataatacttgtttgaatttaagaagaaagtgacattcctt |
161 |
Q |
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| T |
51532347 |
cacaaataatacttgtttgaatttaagaagaaagtgacattcctt |
51532303 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 18056048 - 18056128
Alignment:
| Q |
12 |
aaaataaataagtgatagcaaggccaatttaacaaggtcgtgaatatctcaggatnnnnnnnttcgggatacttatcatta |
92 |
Q |
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| T |
18056048 |
aaaaaaaaaaagtgatagcaagaccaatttaacaaggtcgtgaatatctcgggataaaaaaattcgggatactcatcatta |
18056128 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 10587385 - 10587459
Alignment:
| Q |
21 |
aagtgatagcaaggccaatttaacaaggtcgtgaatatctcaggatnnnnnnnttcgggatacttatcattaccc |
95 |
Q |
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| T |
10587385 |
aagtgatagcaaggccattttaacaaggtcgtgaatatgtcgggataaaaaaattcaggatacttatcattaccc |
10587459 |
T |
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