View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19313_low_1 (Length: 614)
Name: NF19313_low_1
Description: NF19313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19313_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 14 - 607
Target Start/End: Original strand, 30907018 - 30907612
Alignment:
| Q |
14 |
aatatacctcgagagtttgcacacacaatcaatcatctttcaacatcaatagttggaccaacactactaactccaacaaactttggtagcactcatatta |
113 |
Q |
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| T |
30907018 |
aatatacctcgagagtttgcacacacaaccaatcatctttcgacatcaatagttagaccaacactactaactccaataaactttggtagcactcatatta |
30907117 |
T |
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| Q |
114 |
ccgaaatttattcttcaaacaccactgaccaccttccactcccccatttcctaaataacatagttcatttgctctgaccactcgaatggccttggaaaag |
213 |
Q |
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| T |
30907118 |
ccgaaatttattcttcaaacaccactgaccaccttccactcccccatttcctaaataacatagttcatttgctcttaccactcgaatggccttggaaaag |
30907217 |
T |
|
| Q |
214 |
nnnnnnncgtagggaaatcaccacaccatacatcatacctaaaccgagttcctccccatcgcccaaattcttcttcgttggattaatatcttgatattgc |
313 |
Q |
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| T |
30907218 |
tttttttcgtagggaaatcaccacaccatacatcatacctaaaccgagttcctccccatcgcccaaattcttctttgttggattaatatcttgatattgc |
30907317 |
T |
|
| Q |
314 |
tgtgtatgatattgatacccataatgatattcgatatgtggtatgccgcaagtgtacagttatgtcaattttaatataaagagttgtcaaatcacataga |
413 |
Q |
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| T |
30907318 |
tctgtatgatattggtacccataatgatattcgatatgtggtatgccgcaagtgtacggttatgtcaattttaatataaagagttgtcaaatcacataga |
30907417 |
T |
|
| Q |
414 |
ccaattacaagtaccgttgtcttttctttgtttatctaag-ctagttcaaaacaatttttgattcgcgcgcaaaataaaacaatacattttaattcgata |
512 |
Q |
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| T |
30907418 |
ccaattacaagtacccttatcttttctttgtttatctaagactagttcaaaacaattttttattcgcgcgcaaaataaaataaaatattttaattcgata |
30907517 |
T |
|
| Q |
513 |
ataacaactagagaccaaaactatgatttctgtcaacctaattcactcatgaaaatttccctnnnnnnnngtcactcatgtaaattgcactattt |
607 |
Q |
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| T |
30907518 |
ataacaactagagaccaaaacgatgatttctgttaacctaattcactcatgaaaatttccctaaaaaaaagtcactcatgtaaattgcactattt |
30907612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 382 - 561
Target Start/End: Complemental strand, 26222661 - 26222476
Alignment:
| Q |
382 |
ttttaatataaagagttgtcaaatc-acatagaccaattacaagtaccg----ttgtcttttctttgtttatctaa-gctagttcaaaacaatttttgat |
475 |
Q |
| |
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||||| |||||| |||||| |||| ||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||| | |
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| T |
26222661 |
ttttagtataaaaggttgtcgaatccacaaagaccaattacaagtaccgctatatgtcgtttctttgtttatctaaggctagttcaaaacaaattttgtt |
26222562 |
T |
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| Q |
476 |
tcgcgcgcaaaataaaacaatacattttaattcgataataacaactagagaccaaaactatgatttctgtcaacctaattcactca |
561 |
Q |
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| T |
26222561 |
tcacgcgtaaaattaaaataactattttaattcgattataacaacgagatgccaaaacgatggtttacgtcaacctaagtcactca |
26222476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 561
Target Start/End: Original strand, 26227052 - 26227230
Alignment:
| Q |
382 |
ttttaatataaagagttgtcaaatc-acatagaccaattacaagtaccgtt----gtcttttctttgtttatctaag-ctagttcaaaacaatttttgat |
475 |
Q |
| |
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||||| |||||| |||||| |||| |||||||||||||||||||| || | ||| |||||||||||||||||| ||| |||||||||||||||| | |
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| T |
26227052 |
ttttagtataaaaggttgtcgaatctacatagaccaattacaagtaacgctatgagtcgtttctttgtttatctaaggctaattcaaaacaatttttgtt |
26227151 |
T |
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| Q |
476 |
tcgcgcgcaaaataaaacaatacattttaattcgataataacaactagagaccaaaactatgatttctgtcaacctaattcactca |
561 |
Q |
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| T |
26227152 |
tcgcgtgtaaaattaaa----atattttaattcgataataacgattag---ccaaaatgatggtttccgtcaacctaagtcactca |
26227230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 561
Target Start/End: Original strand, 9296313 - 9296473
Alignment:
| Q |
406 |
cacatagaccaattacaagtaccgt----tgtcttttctttgtttatct-aagctagttcaaaacaatttttgattcgcgcg-caaaataaaacaataca |
499 |
Q |
| |
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|||||| || ||||||||||||||| |||| ||||||||||||||| ||| ||||| |||||||||||| |||||||| ||||||||| || | |
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| T |
9296313 |
cacataaacaaattacaagtaccgtcatctgtcgtttctttgtttatctaaagttagttgaaaacaatttttatttcgcgcgtaaaaataaaataa-cga |
9296411 |
T |
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| Q |
500 |
ttttaattcgataataacaactagagaccaaaactatgatttctgtcaacctaattcactca |
561 |
Q |
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| T |
9296412 |
ttttagtttgatgataacaacgagaggccaaaatgatagtttccgtcaacctaagtcactca |
9296473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 479
Target Start/End: Original strand, 26041254 - 26041379
Alignment:
| Q |
361 |
gcaagtgtacagttatgtcaattttaatataaagagttgtcaaatc-acatagaccaatt-acaagtaccgt----tgtcttttctttgtttatctaa-g |
453 |
Q |
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|||||||||| ||||| ||| ||||| |||||||||||||| |||| ||| |||| |||| |||||||| || |||| ||||||||| ||||||| | |
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| T |
26041254 |
gcaagtgtacggttatatcagttttagtataaagagttgtcgaatctacaaagactaattcacaagtacggttatctgtcgtttctttgtctatctaagg |
26041353 |
T |
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| Q |
454 |
ctagttcaaaacaatttttgattcgc |
479 |
Q |
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|||||||| || |||||||| ||||| |
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| T |
26041354 |
ctagttcataataatttttgtttcgc |
26041379 |
T |
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