View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19313_low_3 (Length: 335)
Name: NF19313_low_3
Description: NF19313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19313_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 38568849 - 38569166
Alignment:
| Q |
1 |
tgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgatatgcaggtgttcggaca |
100 |
Q |
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| T |
38568849 |
tgaaaatttattctacaaattaaagaaaaatctcattcatcccataagtacagctcgtttggtatagctgcaaagatgttgatatgcaggtgttcggaca |
38568948 |
T |
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| Q |
101 |
cgacactccctgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggttttatgttaccttggtcactt |
200 |
Q |
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| T |
38568949 |
cgacactccccgatttaccacgctagactacgacaaaaagagaaatcattcattaacgaatataatttcgtagcatggttttatgttaccttggtcactt |
38569048 |
T |
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| Q |
201 |
ggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgataggtaaacccaaaccatttccaat |
300 |
Q |
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| T |
38569049 |
ggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgataggtaaacccaaaccatttccaat |
38569148 |
T |
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| Q |
301 |
agcaccaatagtaccaac |
318 |
Q |
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| T |
38569149 |
agcaccaatagtaccaac |
38569166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 318
Target Start/End: Original strand, 38527615 - 38527753
Alignment:
| Q |
180 |
tttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgatagg |
279 |
Q |
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| T |
38527615 |
tttatgataccttggacacttgttctacaacatcggtggtgttactttggttactaccaaaactatcaatcatttgaccgaacaataatgtcataagagg |
38527714 |
T |
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| Q |
280 |
taaacccaaaccatttccaatagcaccaatagtaccaac |
318 |
Q |
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| T |
38527715 |
taaacccaaaccgtttccaatagcaccgatagtaccaac |
38527753 |
T |
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