View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19313_low_6 (Length: 229)
Name: NF19313_low_6
Description: NF19313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19313_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 2058130 - 2057934
Alignment:
| Q |
16 |
atattaatagttgatgttnnnnnnncacgattaataggaatgctcgtgagtccggataacccgttcaattcaacaatccaaacaaactcaaccccatatt |
115 |
Q |
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| T |
2058130 |
atattaatagttgatgttaaaaaaacacgattaataggaatgctcgtgagtccggataacccgttcaattcaacaatccaaacaaactcaaccccatatt |
2058031 |
T |
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| Q |
116 |
ttacctgaacacatttaagtttgggtcaaacatgagccaatttgttctaaatttaaagtgaattggttttgataacaaatttatgattgcaaatcca |
212 |
Q |
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| T |
2058030 |
ttacccgaacacatttaagtttaggtcaaacatgagccaatttattctaaatttaaagcgaattggttttgataacaaatttatgattgcaaatcca |
2057934 |
T |
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