View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19314_high_2 (Length: 443)
Name: NF19314_high_2
Description: NF19314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19314_high_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 55475089 - 55475500
Alignment:
| Q |
20 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55475089 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcattaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttat |
55475188 |
T |
|
| Q |
120 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatttggaactattaccttaattttggtaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55475189 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
55475288 |
T |
|
| Q |
220 |
aatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagttacaatcagagggaatctat |
319 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
55475289 |
aatggatctagtatgcctaaccaatttcattttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
55475388 |
T |
|
| Q |
320 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaagttctttaattagattgaagctacaatattgtttttaagt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
55475389 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttttaatt |
55475488 |
T |
|
| Q |
420 |
gtgggttccata |
431 |
Q |
| |
|
|||||||||||| |
|
|
| T |
55475489 |
gtgggttccata |
55475500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 92152 - 92563
Alignment:
| Q |
20 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
92152 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaattcataaaagaacacaaaaatcacaactcatgaatttgggtaaaattgtttat |
92251 |
T |
|
| Q |
120 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatttggaactattaccttaattttggtaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
92252 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatatagaatttgagatctggaactattaccttaattttggtaat |
92351 |
T |
|
| Q |
220 |
aatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagttacaatcagagggaatctat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
92352 |
aatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
92451 |
T |
|
| Q |
320 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaagttctttaattagattgaagctacaatattgtttttaagt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
92452 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttttaatt |
92551 |
T |
|
| Q |
420 |
gtgggttccata |
431 |
Q |
| |
|
||| |||||||| |
|
|
| T |
92552 |
gtgagttccata |
92563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 28 - 431
Target Start/End: Complemental strand, 41886235 - 41885832
Alignment:
| Q |
28 |
tcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttatccaacaac |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41886235 |
tcctttccttcatctctccatcttggtcttcatttttaaatcataaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttatccaacaac |
41886136 |
T |
|
| Q |
128 |
ttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatttggaactattaccttaattttggtaataatagatc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
41886135 |
ttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgatatctggaactattaccttaattttggtaataattgatc |
41886036 |
T |
|
| Q |
228 |
tagtatgcctaaccaatttcattttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagttacaatcagagggaatctatgaaaccca |
327 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
41886035 |
tagtatgcctaaccaatttttttttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagctacaatcagaaggaatctatgaaaccca |
41885936 |
T |
|
| Q |
328 |
tataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaagttctttaattagattgaagctacaatattgtttttaagtgtgggttc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
41885935 |
tataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttttaattgtgggttc |
41885836 |
T |
|
| Q |
428 |
cata |
431 |
Q |
| |
|
|||| |
|
|
| T |
41885835 |
cata |
41885832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 27277482 - 27277071
Alignment:
| Q |
20 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27277482 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaattcataaaagaacacaaaaatcacaactcatgaatttgggcaaaattgtttat |
27277383 |
T |
|
| Q |
120 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatttggaactattaccttaattttggtaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27277382 |
ccaacaacttcatattctccctttcatcatttctctctcattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
27277283 |
T |
|
| Q |
220 |
aatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagttacaatcagagggaatctat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
27277282 |
aatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgctattaatcaaaataacataatactggtgagctacaatcagaaggaatctat |
27277183 |
T |
|
| Q |
320 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaagttctttaattagattgaagctacaatattgtttttaagt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| | |
|
|
| T |
27277182 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaaggtagaatattgtttttaatt |
27277083 |
T |
|
| Q |
420 |
gtgggttccata |
431 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27277082 |
gtgggttccata |
27277071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 429
Target Start/End: Complemental strand, 20901251 - 20900842
Alignment:
| Q |
20 |
aaccgtattcctttccttcatctctcc-----atcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactcatggatttgggcaaaattg |
114 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20901251 |
aaccgtattcctttccctcatctctcctctccatcttggtcttcattttcaattcataaaagaacacaaaaatcacaactcatggatttgggcaaaattg |
20901152 |
T |
|
| Q |
115 |
tttatccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatttggaactattaccttaattttg |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20901151 |
tttatccaacaac---atattctccctttcatcatttctctcccat--atctaaaactctgatttagaatttgagatctggaactattaccttaattttg |
20901057 |
T |
|
| Q |
215 |
gtaataatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagttacaatcagagggaa |
314 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||| |||| |
|
|
| T |
20901056 |
gtaataatagatctagtatgccgaaccaatttcattttatcaacaaaaacgtgctattaatcaaaataatagaatactggtaagctacaatcagaaggaa |
20900957 |
T |
|
| Q |
315 |
tctatgaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaagttctttaattagattgaagctacaatattgtttt |
414 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20900956 |
tctctgaaacccatataaatggagaaactattatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttt |
20900857 |
T |
|
| Q |
415 |
taagtgtgggttcca |
429 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
20900856 |
taattgtgggttcca |
20900842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 32 - 348
Target Start/End: Original strand, 48379610 - 48379951
Alignment:
| Q |
32 |
ttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttatccaacaact--- |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
48379610 |
ttccttcatctctccatcttggtcttcattttcaattcatagaagaacacaaaaatcagaactcatgaatttgggtaaaattgtttatccaacaactgaa |
48379709 |
T |
|
| Q |
129 |
------tcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatttgga----------------actattacct |
206 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||| | ||||||| |
|
|
| T |
48379710 |
acaacttcatattcaccctttcattctttctctcccattcaactaaaactctgatttagaaattgagatctggacaaccacaaatattgtagcattacct |
48379809 |
T |
|
| Q |
207 |
taattttggtaataatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagttacaatc |
306 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
48379810 |
taattttcgtaataatagaactagtatgcctaatcaattttattttatcaccaaaaacgtcctattaatcaaaataatagagtactagtgagttacaatc |
48379909 |
T |
|
| Q |
307 |
agagggaatctatgaaacccatataaatggagaaactatcat |
348 |
Q |
| |
|
||| ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
48379910 |
agaaggaatttatgaaacccatataaatggaaaaactatcat |
48379951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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