View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19314_low_1 (Length: 636)

Name: NF19314_low_1
Description: NF19314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19314_low_1
NF19314_low_1
[»] chr4 (14 HSPs)
chr4 (266-617)||(22216605-22216956)
chr4 (13-161)||(22216354-22216502)
chr4 (73-133)||(25097079-25097139)
chr4 (23-157)||(9054746-9054885)
chr4 (483-597)||(12608250-12608365)
chr4 (398-537)||(22346448-22346587)
chr4 (483-554)||(25096656-25096727)
chr4 (79-157)||(9810079-9810157)
chr4 (483-549)||(17109058-17109124)
chr4 (484-554)||(20827863-20827933)
chr4 (76-125)||(17109491-17109540)
chr4 (504-615)||(11782789-11782901)
chr4 (76-123)||(13131133-13131181)
chr4 (483-539)||(13131536-13131592)
[»] chr8 (21 HSPs)
chr8 (283-566)||(13833049-13833333)
chr8 (280-554)||(17970858-17971136)
chr8 (16-157)||(28857340-28857479)
chr8 (31-161)||(17971262-17971391)
chr8 (495-617)||(25227552-25227675)
chr8 (80-133)||(17511669-17511722)
chr8 (19-161)||(20988631-20988768)
chr8 (76-133)||(17099472-17099529)
chr8 (76-133)||(24721610-24721667)
chr8 (266-539)||(20988862-20989136)
chr8 (495-554)||(18446537-18446596)
chr8 (76-130)||(15175704-15175758)
chr8 (484-605)||(17511211-17511332)
chr8 (459-536)||(24909340-24909417)
chr8 (486-554)||(18570853-18570921)
chr8 (75-127)||(25231445-25231497)
chr8 (483-538)||(21317157-21317212)
chr8 (483-554)||(26829132-26829203)
chr8 (495-548)||(17099887-17099940)
chr8 (76-133)||(18571273-18571330)
chr8 (506-605)||(24722047-24722147)
[»] chr7 (16 HSPs)
chr7 (352-617)||(9786493-9786761)
chr7 (21-156)||(9786156-9786291)
chr7 (352-548)||(6038837-6039034)
chr7 (348-617)||(2506356-2506627)
chr7 (396-554)||(13281332-13281490)
chr7 (495-564)||(13287389-13287458)
chr7 (76-133)||(39269529-39269586)
chr7 (61-157)||(6038541-6038637)
chr7 (77-133)||(12389304-12389360)
chr7 (483-554)||(12388887-12388958)
chr7 (483-597)||(13755583-13755698)
chr7 (34-127)||(9787660-9787753)
chr7 (495-548)||(13252385-13252438)
chr7 (76-133)||(19202218-19202275)
chr7 (76-136)||(23690017-23690076)
chr7 (72-133)||(20578225-20578286)
[»] chr5 (18 HSPs)
chr5 (20-161)||(17924570-17924711)
chr5 (60-157)||(26118070-26118167)
chr5 (21-134)||(26271846-26271958)
chr5 (348-539)||(25572017-25572209)
chr5 (18-157)||(24262814-24262952)
chr5 (348-554)||(34489212-34489419)
chr5 (23-151)||(23771748-23771874)
chr5 (76-133)||(24319842-24319899)
chr5 (76-127)||(9834247-9834298)
chr5 (354-554)||(24262404-24262605)
chr5 (385-549)||(24320092-24320256)
chr5 (76-127)||(20547708-20547759)
chr5 (27-82)||(27279415-27279470)
chr5 (23-133)||(34489636-34489746)
chr5 (396-554)||(31599653-31599812)
chr5 (80-131)||(16603890-16603941)
chr5 (66-133)||(31599347-31599414)
chr5 (18-157)||(25571667-25571808)
[»] chr3 (26 HSPs)
chr3 (401-536)||(20337865-20338000)
chr3 (283-539)||(4839278-4839534)
chr3 (48-161)||(20289651-20289763)
chr3 (16-82)||(4839701-4839767)
chr3 (396-542)||(8766045-8766191)
chr3 (16-111)||(20337493-20337591)
chr3 (66-133)||(16226068-16226135)
chr3 (396-554)||(8145607-8145765)
chr3 (59-134)||(28313467-28313542)
chr3 (362-539)||(28325685-28325863)
chr3 (76-133)||(13586333-13586390)
chr3 (396-524)||(8770937-8771065)
chr3 (76-127)||(8146585-8146636)
chr3 (76-127)||(8771312-8771363)
chr3 (66-133)||(19166598-19166665)
chr3 (495-566)||(52935219-52935290)
chr3 (76-133)||(8766423-8766480)
chr3 (66-127)||(12770501-12770562)
chr3 (72-136)||(12676694-12676757)
chr3 (484-536)||(34276108-34276160)
chr3 (495-554)||(12770876-12770935)
chr3 (72-127)||(14426812-14426867)
chr3 (18-124)||(8402992-8403096)
chr3 (484-554)||(19167025-19167095)
chr3 (396-428)||(10951589-10951621)
chr3 (396-428)||(11520651-11520683)
[»] chr1 (8 HSPs)
chr1 (23-157)||(16115539-16115672)
chr1 (353-554)||(16115156-16115359)
chr1 (16-106)||(17610630-17610717)
chr1 (72-119)||(18828148-18828195)
chr1 (17-74)||(11898527-11898584)
chr1 (16-136)||(16259547-16259665)
chr1 (71-145)||(23222696-23222771)
chr1 (396-448)||(25130539-25130592)
[»] chr6 (11 HSPs)
chr6 (18-157)||(22525896-22526034)
chr6 (18-157)||(28588346-28588482)
chr6 (16-126)||(8322160-8322270)
chr6 (23-151)||(22570604-22570731)
chr6 (386-539)||(22570217-22570370)
chr6 (27-147)||(12586270-12586391)
chr6 (495-556)||(15552599-15552660)
chr6 (76-133)||(21844994-21845051)
chr6 (61-127)||(19742361-19742427)
chr6 (79-131)||(12490594-12490644)
chr6 (396-448)||(17860896-17860948)
[»] scaffold0020 (1 HSPs)
scaffold0020 (58-152)||(122555-122649)
[»] chr2 (13 HSPs)
chr2 (444-554)||(23009673-23009783)
chr2 (354-554)||(24526746-24526946)
chr2 (386-618)||(28918483-28918716)
chr2 (483-555)||(25922962-25923034)
chr2 (483-539)||(25532613-25532669)
chr2 (68-127)||(9503834-9503893)
chr2 (68-127)||(9515200-9515259)
chr2 (76-133)||(28918959-28919016)
chr2 (76-127)||(25923390-25923441)
chr2 (80-150)||(16815516-16815586)
chr2 (80-150)||(16854673-16854743)
chr2 (504-554)||(25885884-25885934)
chr2 (76-125)||(25533000-25533049)
[»] scaffold0072 (1 HSPs)
scaffold0072 (16-123)||(38964-39068)
[»] scaffold0718 (1 HSPs)
scaffold0718 (72-136)||(1455-1518)
[»] scaffold0049 (1 HSPs)
scaffold0049 (76-136)||(40283-40342)
[»] scaffold0990 (1 HSPs)
scaffold0990 (89-145)||(2659-2714)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 266 - 617
Target Start/End: Original strand, 22216605 - 22216956
Alignment:
Q  266 atctatcttgaaatatgaaagataaatagttcttcttagtatccatcttgcttggtttaaggaagaaagatagatagtgctacaatttttagtaagaatc 365  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22216605 atctatcttgaaatatgaaagataaatagttcttcttagtacccatcttgtttggtttaaggaagaaagatagatagtgcttcaatttttagtaagaatc 22216704  T
Q  366 attaggttgataatataactcaagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaag 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  22216705 attaggttgataatataactcaagttcatctgttagcctactttcttaaatatatcccacattagtctaagtcatgttataactctgaaagacctcaaag 22216804  T
Q  466 tatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggaccaa 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||     
T  22216805 tatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttacagcaaggtagattcatgtgacgattgaagtgggaaaatttcgtgaccag 22216904  T
Q  566 catacagtatttaggagatacataagtgtatcttggaaaacagtgtggctga 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22216905 catacagtatttaggagatacataagtgtatcttggaaaacagtgtggctga 22216956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 22216354 - 22216502
Alignment:
Q  13 tcatcatctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaaca 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22216354 tcatcatctatttgatttctcttggagttggatagaatatttataataatttggtatgatttaaaactaagtttgaggttgctctgtggaattagcaaca 22216453  T
Q  113 ttttaagtttggggtagggtactaagagaacttatttattaaaaatgaa 161  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22216454 ttttaagtttggggtagggtaccaagagaacttatttattaaaaatgaa 22216502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 25097139 - 25097079
Alignment:
Q  73 ttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||||    
T  25097139 ttaaaactaagtttggggttgctctttggaattagcaacatcttaagtttggggtggggta 25097079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 9054885 - 9054746
Alignment:
Q  23 tttgatttctcttggagttggatagaatatttgta-----ataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacatttta 117  Q
    ||||||||||||||||||| |||||| ||||  ||     |||||||||||||| ||||| ||||||||| |||| |||| || ||||| ||||||||||    
T  9054885 tttgatttctcttggagttagatagattattattattattataacttggtatgagttaaagctaagtttggggtttctctttgaaattaacaacatttta 9054786  T
Q  118 agtttggggtagggtactaagagaacttatttattaaaaa 157  Q
    | ||||||||  ||||| |  |||||||| |||| |||||    
T  9054785 aatttggggtgcggtaccagtagaacttagttatcaaaaa 9054746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 483 - 597
Target Start/End: Complemental strand, 12608365 - 12608250
Alignment:
Q  483 cttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggaccaa-catacagtatttagga 581  Q
    |||||||||| ||||||||| |||||||||||| |||||| || ||||||||||||| || |||||| |||| | | |||||| | ||| | ||||||||    
T  12608365 cttgactgtctatttagaattgtttcaaatttatagcaagatacattcatgtgacgactggagtgggcaaatgtcgtgaccaaccctactggatttagga 12608266  T
Q  582 gatacataagtgtatc 597  Q
    |||| ||| |||||||    
T  12608265 gatatatatgtgtatc 12608250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 398 - 537
Target Start/End: Complemental strand, 22346587 - 22346448
Alignment:
Q  398 ttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatgagcttgactgtcaattt 497  Q
    ||||| |||||| ||||||||||| |||||||   |||| ||||||||||   ||||||| |||||| | |||||||||||||| ||||| |||   |||    
T  22346587 ttagcttacttttttaaatatatctcaccttaacttaagccatgttataatcttgaaagacctcaaaatgtgtatatagtatgatcttgaatgtttgttt 22346488  T
Q  498 agaatggtttcaaatttaaagcaaggtagattcatgtgac 537  Q
    | | | || ||||||||| ||||||||| |||||||||||    
T  22346487 atatttgtctcaaatttacagcaaggtacattcatgtgac 22346448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 25096727 - 25096656
Alignment:
Q  483 cttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    ||||||||||  |||||||| |||||||||||| ||||||||| ||||||||||||| || |||||| ||||    
T  25096727 cttgactgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacgactggagtgggcaaat 25096656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 9810079 - 9810157
Alignment:
Q  79 ctaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtactaagagaacttatttattaaaaa 157  Q
    ||||||||||||||||||| |  ||||| |||||||||||||||| ||| |||||| |  ||||||||||||| |||||    
T  9810079 ctaagtttgaggttgctcttttaaattaacaacattttaagtttgaggtggggtaccagtagaacttatttatcaaaaa 9810157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 483 - 549
Target Start/End: Complemental strand, 17109124 - 17109058
Alignment:
Q  483 cttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtggg 549  Q
    ||||||||||  |||| ||| |||||||||||| ||||||||| ||||||||||||| |||||||||    
T  17109124 cttgactgtctgtttaaaattgtttcaaatttatagcaaggtacattcatgtgacgactgaagtggg 17109058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 20827863 - 20827933
Alignment:
Q  484 ttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    |||| |||| ||||||||| |||||||||||| ||||||||| ||| ||||||||| || |||||| ||||    
T  20827863 ttgattgtctatttagaattgtttcaaatttacagcaaggtacatttatgtgacgactggagtgggcaaat 20827933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 17109540 - 17109491
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggg 125  Q
    |||||||||||| ||||||||| |||||||| ||||||||||| ||||||    
T  17109540 aaactaagtttggggttgctctttggaattaacaacattttaattttggg 17109491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 615
Target Start/End: Complemental strand, 11782901 - 11782789
Alignment:
Q  504 gtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggaccaa-catacagtatttaggagatacataagtgtatcttgga 602  Q
    |||||||||||| | ||||||| |||||||||||||||| | |||  |||| ||| |||||| | ||| |  ||||||||||||||| ||||||| | ||    
T  11782901 gtttcaaatttataacaaggtacattcatgtgacgattggaatggacaaatgttgtgaccaaccctactgactttaggagatacatatgtgtatcataga 11782802  T
Q  603 aaacagtgtggct 615  Q
    ||| ||| |||||    
T  11782801 aaagagtatggct 11782789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 13131133 - 13131181
Alignment:
Q  76 aaactaagttt-gaggttgctctatggaattagcaacattttaagtttg 123  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  13131133 aaactaagttttgaggttgctctttggaattagcaacatcttaagtttg 13131181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 13131536 - 13131592
Alignment:
Q  483 cttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacga 539  Q
    ||||||||||  |||||||| |||||||||||| | ||||||| |||||||||||||    
T  13131536 cttgactgtctgtttagaattgtttcaaatttataacaaggtacattcatgtgacga 13131592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 283 - 566
Target Start/End: Original strand, 13833049 - 13833333
Alignment:
Q  283 aaagataaatagttcttcttagtatccatcttgcttggtttaaggaagaaagatagatagtgctacaatttttagtaagaatcattaggttgataatata 382  Q
    |||||||||||||||| |||||||||||||||| ||| || ||||||||| | |   ||   || |||| ||||||| ||||| ||||||||||||| ||    
T  13833049 aaagataaatagttctacttagtatccatcttgtttgattcaaggaagaagggtttgtaacacttcaatgtttagtaggaatccttaggttgataatcta 13833148  T
Q  383 actc-aagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatga 481  Q
    |||| ||||| || |||||| ||||| ||| |||||||| ||||||||  ||||| || |||| ||| |||||||| |||||||| ||||||||||||||    
T  13833149 actccaagtttatatgttagtctactatctcaaatatatgccaccttaccctaagccacgttacaaccctgaaagacctcaaagtgtgtatatagtatga 13833248  T
Q  482 gcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggaccaac 566  Q
     ||||| ||||  |||||||| |||||||||||| |  |||||| |||||||||||||||| | |||| |||| ||| |||||||    
T  13833249 tcttgattgtctgtttagaattgtttcaaatttacaataaggtacattcatgtgacgattggattgggcaaatgttgtgaccaac 13833333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 280 - 554
Target Start/End: Complemental strand, 17971136 - 17970858
Alignment:
Q  280 atgaaagataaatagttcttcttagtatccatcttgctt-ggtttaaggaagaaa--gatagatagtgctacaatttttagtaagaatcattaggttgat 376  Q
    |||||||| ||| |||||| ||||||| |||||||| || ||||||||||| |||  || || || | || |||| ||||||| ||||   || |||||     
T  17971136 atgaaagaaaaaaagttctacttagtacccatcttgttttggtttaaggaaaaaaaagacaggtaatacttcaatgtttagtaggaattcataagttgaa 17971037  T
Q  377 aatataactc-aagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatata 475  Q
    ||| |||||| |||||  | |||||||||| ||||   ||||||| ||||||||  |||||  |  ||||||| || ||||| |||||||| ||||||||    
T  17971036 aatctaactccaagttgttttgttagcctattttccctaatatattccaccttaacctaagctacattataaccctcaaagacctcaaagtgtgtatata 17970937  T
Q  476 gtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    |||||| ||||| ||||  |||| ||| |||||||||||| ||||||||| ||||||||||||| ||||||||| ||||    
T  17970936 gtatgatcttgaatgtctgtttataattgtttcaaatttatagcaaggtacattcatgtgacgactgaagtgggcaaat 17970858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 28857479 - 28857340
Alignment:
Q  16 tcatctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattt 115  Q
    |||||||||||||||||||||||||| ||||||| |||| ||  ||||||||||| ||| || ||||||||  |||| |||| | |||||||||| ||||    
T  28857479 tcatctatttgatttctcttggagttagatagaa-atttttac-aacttggtatggtttgaagctaagtttagggtttctctttagaattagcaatattt 28857382  T
Q  116 taagtttggggtagggtactaagagaacttatttattaaaaa 157  Q
    |||||||||||| ||||||||  ||||||||||||| |||||    
T  28857381 taagtttggggtggggtactagtagaacttatttatcaaaaa 28857340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 17971391 - 17971262
Alignment:
Q  31 ctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagg 130  Q
    ||||||||||| ||||||||||||  |||||||| |||||||||||||||||||||| ||||||| | || |||| ||||||| |||  ||| |||| ||    
T  17971391 ctcttggagtttgatagaatattttgaataactttgtatgatttaaaactaagtttggggttgctatttgaaatttgcaacatcttagatttagggt-gg 17971293  T
Q  131 gtactaagagaacttatttattaaaaatgaa 161  Q
    |||| |  | ||||||||||| |||||||||    
T  17971292 gtaccactaaaacttatttatcaaaaatgaa 17971262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 495 - 617
Target Start/End: Complemental strand, 25227675 - 25227552
Alignment:
Q  495 tttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggaccaa-catacagtatttaggagatacataagtg 593  Q
    |||| ||| |||||||||||| ||||||||| ||||||||||||| || ||||||||||| | | |||||| | ||| | |||||||||||||||| |||    
T  25227675 tttataattgtttcaaatttatagcaaggtacattcatgtgacgactggagtgggaaaatgtcgtgaccaaccctactggatttaggagatacatacgtg 25227576  T
Q  594 tatcttggaaaacagtgtggctga 617  Q
    |||| | ||||| ||| |||||||    
T  25227575 tatcatagaaaaaagtatggctga 25227552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 17511722 - 17511669
Alignment:
Q  80 taagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  17511722 taagtttgaggttgctctttggaattagcaacattttaagtttggggtggggta 17511669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 20988631 - 20988768
Alignment:
Q  19 tctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaa 118  Q
    ||||||||||||||||||||||| |||| ||| |||  |||||||| ||||||||| ||||||| |||| || |||| | || |||||   |||| ||||    
T  20988631 tctatttgatttctcttggagttagatataattttt--aataactttgtatgatttgaaactaaatttggggctgctatttgaaatta---acatcttaa 20988725  T
Q  119 gtttggggtagggtactaagagaacttatttattaaaaatgaa 161  Q
    |||||||| ||||||| ||  |||||| ||||| |||||||||    
T  20988726 gtttggggcagggtaccaacggaacttgtttatcaaaaatgaa 20988768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 17099472 - 17099529
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||    
T  17099472 aaactaagtctggggttgctctttggaattagcaacattttaagtttggggtggggta 17099529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 24721610 - 24721667
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||    
T  24721610 aaactaagtttggggttgctctttggaattagcaacactttaagtttggggtggggta 24721667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 266 - 539
Target Start/End: Original strand, 20988862 - 20989136
Alignment:
Q  266 atctatcttgaaatatgaaagataaatagttcttcttagtatccatcttgctt-ggtttaaggaag-aaagatagatagtgctacaatttttagtaagaa 363  Q
    |||||||||  || || ||||||||| |||||| ||||||| |||||||  || |||||||||||| |||||| ||||    | |||| ||||||| |||    
T  20988862 atctatcttacaaaattaaagataaaaagttctacttagtacccatcttattttggtttaaggaaggaaagat-gataaaatttcaatgtttagtaggaa 20988960  T
Q  364 tcattaggttgataatataact-caagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactca 462  Q
    ||  |||||||| ||| ||||| ||||||  | | ||| |||||||||  |||||||||||||||||   ||||||| ||||||||  ||| ||| ||||    
T  20988961 tctataggttga-aatctaacttcaagttgttttattaacctactttcccaaatatatcccaccttaacataagtcacgttataaccttgacagacctca 20989059  T
Q  463 aagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacga 539  Q
    || | |||| |||||||   ||||| || | ||||| ||| |||||||||||| |||||  || |||||||||||||    
T  20989060 aattgtgtaaatagtatattcttgaatgcctatttataattgtttcaaatttatagcaaaatacattcatgtgacga 20989136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 554
Target Start/End: Original strand, 18446537 - 18446596
Alignment:
Q  495 tttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||| || |||||||||||    
T  18446537 tttagaattgtttcaaatttatagcaaggtatattcatgtgacgaatggagtgggaaaat 18446596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 15175704 - 15175758
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagg 130  Q
    |||||||||||| ||||||||| | |||||| |||||||||||||||||||||||    
T  15175704 aaactaagtttggggttgctctttcgaattaacaacattttaagtttggggtagg 15175758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 605
Target Start/End: Complemental strand, 17511332 - 17511211
Alignment:
Q  484 ttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggaccaacatacagtatttaggaga 583  Q
    |||||||||  ||||||||   ||||||||||||||||| || |||||||||| || || ||||||||||| | | ||||| | ||| |  ||||||| |    
T  17511332 ttgactgtctgtttagaatttcttcaaatttaaagcaagatacattcatgtgaagactggagtgggaaaatgtcgtgaccagcctactggctttaggata 17511233  T
Q  584 tacataagtgtatcttggaaaa 605  Q
    |||||| ||||||| |||||||    
T  17511232 tacatacgtgtatcgtggaaaa 17511211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 459 - 536
Target Start/End: Complemental strand, 24909417 - 24909340
Alignment:
Q  459 ctcaaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtga 536  Q
    |||||||| |||||||| | |||  |||||||||  |||||||| |||||||||||| ||||||||| ||||||||||    
T  24909417 ctcaaagtgtgtatataatttgattttgactgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtga 24909340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 554
Target Start/End: Complemental strand, 18570921 - 18570853
Alignment:
Q  486 gactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    |||||||  |||||||| |||||||||||| ||||||||| ||||||||||||| || |||||| ||||    
T  18570921 gactgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacgactggagtgggtaaat 18570853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 25231497 - 25231445
Alignment:
Q  75 aaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||    
T  25231497 aaaactaagtttggggttgctctttggaattaacaacattttaattttggggt 25231445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 538
Target Start/End: Complemental strand, 21317212 - 21317157
Alignment:
Q  483 cttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacg 538  Q
    ||||||||||  |||||||| |||||||||||| ||||||||| ||||||||||||    
T  21317212 cttgactgtctgtttagaattgtttcaaatttagagcaaggtacattcatgtgacg 21317157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 554
Target Start/End: Original strand, 26829132 - 26829203
Alignment:
Q  483 cttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    ||||||||||  |||||||| |||||||||||| || |||||| ||||||||||||| || ||||| |||||    
T  26829132 cttgactgtctgtttagaattgtttcaaatttatagtaaggtacattcatgtgacgactggagtggaaaaat 26829203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 495 - 548
Target Start/End: Original strand, 17099887 - 17099940
Alignment:
Q  495 tttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgg 548  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||| || |||||    
T  17099887 tttagaattgtttcaaatttatagcaaggtacattcatgtgacgactggagtgg 17099940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 18571330 - 18571273
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    |||||||||||| |||| |||| |||||||| |||||| ||||||||||||| |||||    
T  18571330 aaactaagtttggggtttctctttggaattaacaacatcttaagtttggggtggggta 18571273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 605
Target Start/End: Original strand, 24722047 - 24722147
Alignment:
Q  506 ttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggacca-acatacagtatttaggagatacataagtgtatcttggaaa 604  Q
    |||||||||| ||||||||| ||||||||||||| || |||||| |||| ||| |||||  | ||| |  ||||||||||||||| ||| ||| ||||||    
T  24722047 ttcaaatttatagcaaggtacattcatgtgacgactggagtgggtaaatgttgtgaccagccctactggctttaggagatacatacgtgaatcatggaaa 24722146  T
Q  605 a 605  Q
    |    
T  24722147 a 24722147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 352 - 617
Target Start/End: Original strand, 9786493 - 9786761
Alignment:
Q  352 ttttagtaagaatcattaggttgataatataactc-aagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactc 450  Q
    |||||||| |||||| |||||||| |||||||||| |||||  | | ||||||| |||||  ||||| ||||||| | | |||||||||  ||  || ||    
T  9786493 ttttagtaggaatcactaggttgaaaatataactccaagttgttttattagcctgctttcccaaataaatcccacttaaatctaagtcacattgcaattc 9786592  T
Q  451 tgaaagaactcaaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtggga 550  Q
    ||||||| |||||||| |||||||| ||||| ||||| |||| ||||  ||| |||||||||||| ||||||||| ||||||||||| | |  |||||||    
T  9786593 tgaaagacctcaaagtgtgtatatactatgatcttgaatgtctatttgaaattgtttcaaatttatagcaaggtacattcatgtgacaactagagtggga 9786692  T
Q  551 aaattttgggaccaac-atacagtatttaggagatacataagtgtatcttg-gaaaacagtgtggctga 617  Q
    |||| | | |||||||  ||| |  ||||||||||||||| ||||||||||  |||| |||||||||||    
T  9786693 aaatgtcgagaccaactctactgactttaggagatacatatgtgtatcttgaaaaaagagtgtggctga 9786761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 9786156 - 9786291
Alignment:
Q  21 tatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagt 120  Q
    ||||||||||||||| ||||| ||||||||| || ||||||||| ||||||||| ||||||| ||| |||||||||| || ||||| |||||||||||||    
T  9786156 tatttgatttctcttcgagttagatagaataattttaataacttagtatgatttgaaactaaatttaaggttgctctttgaaattatcaacattttaagt 9786255  T
Q  121 ttggggtagggtactaagagaacttatttattaaaa 156  Q
    ||| | | ||||||||  ||||||||||||| ||||    
T  9786256 ttgagttggggtactagtagaacttatttatcaaaa 9786291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 352 - 548
Target Start/End: Original strand, 6038837 - 6039034
Alignment:
Q  352 ttttagtaagaatcattaggttgataatataactca-agttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactc 450  Q
    |||||||| ||||| ||||||||||||| ||||||  ||||| | ||||||||||||||   |||||||| |  |||||  ||||| || ||||||||||    
T  6038837 ttttagtaggaatccttaggttgataatctaactcccagttcttttgttagcctactttgccaaatatattcacccttaacctaagccacgttataactc 6038936  T
Q  451 tgaaagaactcaaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgg 548  Q
    |  |||| |||||||| |||||| | | ||| ||||||||||  |||||||| |||||||||||| || |||||| ||||||||||||| || |||||    
T  6038937 tagaagacctcaaagtgtgtataaaatttgatcttgactgtctgtttagaattgtttcaaatttatagtaaggtacattcatgtgacgaatggagtgg 6039034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 348 - 617
Target Start/End: Original strand, 2506356 - 2506627
Alignment:
Q  348 caatttttagtaagaatcattaggttgataatataactc-aagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttata 446  Q
    |||| ||||||| ||||| ||||||||||||| |||||| |||||  | |  |||| || ||||  |||||||||||||| ||  ||||| ||||| | |    
T  2506356 caatgtttagtaggaatccttaggttgataatctaactccaagtttttttcgtagcatattttcccaaatatatcccaccataacctaagccatgtcaca 2506455  T
Q  447 actctgaaagaactcaaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagt 546  Q
    || | |||| | ||||| ||||||||||| | ||| |||||||| | ||||||||| || ||||||||| | ||||||| |||||||||| || |  |||    
T  2506456 acccggaaaaacctcaatgtatgtatataatctgatcttgactgactatttagaattgtctcaaatttacaacaaggtacattcatgtgatgactttagt 2506555  T
Q  547 gggaaaattttgggaccaac-atacagtatttaggagatacataagtgtatcttggaaaacagtgtggctga 617  Q
    || ||||| ||  |||| ||  ||| |  ||||| | ||||||| ||||||||||||||| |||||| ||||    
T  2506556 ggaaaaatgttttgacccactctactggctttagcatatacatacgtgtatcttggaaaatagtgtgtctga 2506627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 396 - 554
Target Start/End: Original strand, 13281332 - 13281490
Alignment:
Q  396 tgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatgagcttgactgtcaat 495  Q
    |||||||||||||||| |||||||||||||||||   |||| || |||||||| ||  ||||  | ||| | |||||||||||||| ||||| ||||  |    
T  13281332 tgttagcctactttctcaaatatatcccaccttaacttaagccacgttataaccctagaagatttaaaaatgtgtatatagtatgatcttgaatgtctgt 13281431  T
Q  496 ttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    ||||||| || ||||||| | || || ||  ||||||||||||| ||||||||| ||||    
T  13281432 ttagaattgtctcaaattcagagtaaagtgcattcatgtgacgactgaagtggggaaat 13281490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 564
Target Start/End: Original strand, 13287389 - 13287458
Alignment:
Q  495 tttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggacca 564  Q
    |||| ||| |||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||| |||||    
T  13287389 tttataattgtttcaaatttatagcaaggtacattcatgtgacgactgaagtgggaaaatgttgtgacca 13287458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 39269529 - 39269586
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |||||    
T  39269529 aaactaagtttggggttgctctttggaattagaaacattttaagtttggggtggggta 39269586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 6038541 - 6038637
Alignment:
Q  61 acttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtactaagagaacttatttattaaaaa 157  Q
    |||||||||| ||| || |||||||||  |||||| | ||||||||||||||| ||||||||||||| |||||| |  |||||| |||||| |||||    
T  6038541 acttggtatggttttaagctaagtttggtgttgctatttggaattagcaacatcttaagtttggggtggggtaccagtagaactaatttatcaaaaa 6038637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 12389360 - 12389304
Alignment:
Q  77 aactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    ||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||    
T  12389360 aactaagtttgaggttgctctttgaaattagcaacattttaagttcggggtggggta 12389304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 554
Target Start/End: Complemental strand, 12388958 - 12388887
Alignment:
Q  483 cttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    ||||||||||  |||||||| |||||||||||| ||||||||| ||||||||||||| || |||| ||||||    
T  12388958 cttgactgtctgtttagaatagtttcaaatttatagcaaggtacattcatgtgacgactggagtgagaaaat 12388887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 597
Target Start/End: Original strand, 13755583 - 13755698
Alignment:
Q  483 cttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggacca-acatacagtatttagga 581  Q
    |||||||||| ||||||||| |||||||||||| | ||||||| |||||||||  || || ||||||||||| | | |||||  | ||| | ||||||||    
T  13755583 cttgactgtctatttagaattgtttcaaatttataacaaggtacattcatgtggtgactgtagtgggaaaatgtcgtgaccatccttactggatttagga 13755682  T
Q  582 gatacataagtgtatc 597  Q
    |||||||| |||||||    
T  13755683 gatacatacgtgtatc 13755698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 9787660 - 9787753
Alignment:
Q  34 ttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    |||||||| |||| ||| ||| | ||||||||||| ||||| |||||||||||| ||||||| | || ||||| ||||||||||| ||| ||||    
T  9787660 ttggagttagatataattttttttataacttggtaggatttgaaactaagtttggggttgctttttgaaattaacaacattttaaattttgggt 9787753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 495 - 548
Target Start/End: Original strand, 13252385 - 13252438
Alignment:
Q  495 tttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgg 548  Q
    |||||||| |||||||||||| ||||||||| |||||||||||||||| |||||    
T  13252385 tttagaattgtttcaaatttatagcaaggtacattcatgtgacgattggagtgg 13252438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 19202275 - 19202218
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    |||||||||||| |||||  || ||||||||||||||||||||||||||||| |||||    
T  19202275 aaactaagtttggggttgacctttggaattagcaacattttaagtttggggtggggta 19202218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 23690076 - 23690017
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtacta 136  Q
    |||||||||||| ||||||| | ||||| ||||||||||||||||||||| | ||||||||    
T  23690076 aaactaagtttggggttgctgt-tggaactagcaacattttaagtttgggatggggtacta 23690017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 20578286 - 20578225
Alignment:
Q  72 tttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    |||||||||||||||| |||| |||| ||| ||||| ||||| |||||||| |||| |||||    
T  20578286 tttaaaactaagtttggggtttctctttgggattagaaacatcttaagtttagggttgggta 20578225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 17924570 - 17924711
Alignment:
Q  20 ctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaag 119  Q
    ||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||| ||| |||||||||| ||||||| || ||||||||| ||||||||    
T  17924570 ctatttgatttcttttggagttggatataatatttttaataaattggtatgatttgaaattaagtttgagtttgctctttgaaattagcaatattttaag 17924669  T
Q  120 tttggggtagggtactaagagaacttatttattaaaaatgaa 161  Q
    |||  |||  ||||  |  ||||||||||||| |||||||||    
T  17924670 tttttggtgaggtatcagtagaacttatttatcaaaaatgaa 17924711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 26118167 - 26118070
Alignment:
Q  60 aacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtactaagagaacttatttattaaaaa 157  Q
    ||||||||||| || ||| ||||||||| ||||||||| |||||||||||| ||||||||||||||||  |||||||  ||||||||||||| |||||    
T  26118167 aacttggtatggttcaaagctaagtttggggttgctctttggaattagcaatattttaagtttggggtgtggtactagtagaacttatttatcaaaaa 26118070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 26271958 - 26271846
Alignment:
Q  21 tatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagt 120  Q
    |||||||||||||||||||||  |||||||| || ||| ||||| ||||||||| |||||||||||| |||| |||| |||||||| ||||||| ||| |    
T  26271958 tatttgatttctcttggagttatatagaataattttaagaactttgtatgatttgaaactaagtttggggttactctttggaattaacaacattctaa-t 26271860  T
Q  121 ttggggtagggtac 134  Q
    ||||||| ||||||    
T  26271859 ttggggtggggtac 26271846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 348 - 539
Target Start/End: Original strand, 25572017 - 25572209
Alignment:
Q  348 caatttttagtaagaatcattaggttgataatataactc-aagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttata 446  Q
    |||| ||||||||||||| ||||||||||||| |||||| |||||  |  ||||| ||||||||  |||| |||||  |||||   |||| || |||| |    
T  25572017 caatctttagtaagaatccttaggttgataatctaactccaagtttcttagttagactactttcccaaatttatccacccttaacttaagccacgttaca 25572116  T
Q  447 actctgaaagaactcaaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacga 539  Q
    || || ||||  |||||||| |||||||| | |||  |||||||||  |||||||| |||||||||||| ||||||||| |||||||||||||    
T  25572117 accctaaaagtcctcaaagtgtgtatataatttgatgttgactgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacga 25572209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 24262952 - 24262814
Alignment:
Q  18 atctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacatttta 117  Q
    |||||||| ||||||||||||||| |||||  ||||  || | |||| ||||| ||| ||  |||||||| ||||||||| || ||||||||||| ||||    
T  24262952 atctatttcatttctcttggagttagataggttattatta-tgacttcgtatggtttgaaggtaagtttggggttgctctttgaaattagcaacaattta 24262854  T
Q  118 agtttggggtagggtactaagagaacttatttattaaaaa 157  Q
    |||||| ||| ||||||||  |||||||||||||||||||    
T  24262853 agtttgtggtggggtactagtagaacttatttattaaaaa 24262814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 348 - 554
Target Start/End: Complemental strand, 34489419 - 34489212
Alignment:
Q  348 caatttttagtaagaatcattaggttgataatataactc-aagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttata 446  Q
    |||| |||||||||||||  ||||||  |||  |||||| |||||| | |||||  |||| || ||||||||||||  |||||  ||||  || ||||||    
T  34489419 caatgtttagtaagaatccctaggttattaaactaactccaagttcttttgttaatctacctttttaaatatatccacccttaacctaaaccacgttata 34489320  T
Q  447 actctgaaagaactcaaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagt 546  Q
    || |||||||| |||||| | |||||||| ||| |  |||||||||  |||||||| || ||||| ||| ||||||||| ||||| ||||||| || |||    
T  34489319 accctgaaagacctcaaaatgtgtatataatattattttgactgtctgtttagaattgtctcaaacttacagcaaggtacattcacgtgacgactggagt 34489220  T
Q  547 gggaaaat 554  Q
    ||||||||    
T  34489219 gggaaaat 34489212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 23771874 - 23771748
Alignment:
Q  23 tttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagttt 122  Q
    |||||||||| |||||||| ||||||| ||||   | ||| || |||| ||| |||||||||||| ||||||||| ||||||||| ||||| ||||||||    
T  23771874 tttgatttctattggagttagatagaacatttt--acaacctgatatggtttgaaactaagtttggggttgctctttggaattagaaacatattaagttt 23771777  T
Q  123 ggggtagggtactaagagaacttatttat 151  Q
     |||||||||| ||  | |||||||||||    
T  23771776 agggtagggtagtagtaaaacttatttat 23771748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 24319842 - 24319899
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||||    
T  24319842 aaactaagtttggggttgctctttggaattaacaacattttaagtttggggtggggta 24319899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 9834298 - 9834247
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    |||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  9834298 aaactaagtttggggttgctctttgaaattagcaacattttaagtttggggt 9834247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 554
Target Start/End: Complemental strand, 24262605 - 24262404
Alignment:
Q  354 ttagtaagaatcattaggttgataatataact-caagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctg 452  Q
    |||||| ||||| ||||||||||||| ||||| ||||||| | |||||||||||||||  |  ||||| |  |||||  ||||  ||  ||||||| |||    
T  24262605 ttagtaggaatccttaggttgataatctaactccaagttcttttgttagcctactttcccatgtatattcacccttaacctaaaccacattataaccctg 24262506  T
Q  453 aaagaactcaaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaa 552  Q
    ||| | |||||||| |||||||||| | |  |||||||||  |||||||| || ||||||||| |  |||||| |||||| | |||| |  |||||||||    
T  24262505 aaatacctcaaagtgtgtatatagtttaattttgactgtctgtttagaattgtctcaaatttacaataaggtacattcatctaacgactagagtgggaaa 24262406  T
Q  553 at 554  Q
    ||    
T  24262405 at 24262404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 549
Target Start/End: Original strand, 24320092 - 24320256
Alignment:
Q  385 tcaagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatgagct 484  Q
    |||||||| | | |||||||||||||  ||||||||||  |||||  |||||    ||||||||| | ||||  ||| |||| |||| ||| | |||  |    
T  24320092 tcaagttcttttattagcctactttcccaaatatatccacccttaacctaagctgagttataactgtcaaagtcctctaagtgtgtaaataatctgattt 24320191  T
Q  485 tgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtggg 549  Q
    ||| ||||  |||||||| || ||||||||| ||||||||| ||||||||||||| |||||||||    
T  24320192 tgaatgtctgtttagaattgtctcaaatttatagcaaggtacattcatgtgacgactgaagtggg 24320256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 20547708 - 20547759
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    |||||||||||| | ||||||| ||||||||||||||| |||||||||||||    
T  20547708 aaactaagtttgggattgctctctggaattagcaacatcttaagtttggggt 20547759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 27279415 - 27279470
Alignment:
Q  27 atttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaa 82  Q
    |||| |||||||||| |||||||||||| |||||||||| |||||||| |||||||    
T  27279415 atttatcttggagttagatagaatatttttaataacttgatatgatttgaaactaa 27279470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 34489746 - 34489636
Alignment:
Q  23 tttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagttt 122  Q
    ||||||||||||||||||| |||||| | ||| |  | ||||| | || ||| || ||||||||||  ||||||| | |||||| |||||||||||||||    
T  34489746 tttgatttctcttggagttagatagatttttttttttgacttgatgtggtttgaagctaagtttgaaattgctcttttgaattaacaacattttaagttt 34489647  T
Q  123 ggggtagggta 133  Q
    | ||| |||||    
T  34489646 gaggtggggta 34489636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 554
Target Start/End: Original strand, 31599653 - 31599812
Alignment:
Q  396 tgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgt--atatagtatgagcttgactgtca 493  Q
    |||||||||||||||  ||||||||||  |||||  | |||||| |||||||| ||  |||  |||||||| |||  ||||||| | |  |||||||||     
T  31599653 tgttagcctactttcccaaatatatccacccttaacccaagtcaagttataacccttgaagtcctcaaagtgtgtgtatatagt-taactttgactgtct 31599751  T
Q  494 atttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
     |||||||| |||||||||||| |||||  || ||||||||||||| |  |||||||||||    
T  31599752 gtttagaattgtttcaaatttacagcaaaatacattcatgtgacgactagagtgggaaaat 31599812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 16603941 - 16603890
Alignment:
Q  80 taagtttgaggttgctctatggaattagcaacattttaagtttggggtaggg 131  Q
    ||||||||||| |||||| || |||||||||||| ||||||||| |||||||    
T  16603941 taagtttgaggctgctctttgaaattagcaacatcttaagtttgaggtaggg 16603890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 31599347 - 31599414
Alignment:
Q  66 gtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    ||||| ||| || ||| ||||| ||||||||| ||||||||||||| ||||| ||||||||| |||||    
T  31599347 gtatggtttgaagctatgtttggggttgctctttggaattagcaacgttttacgtttggggtggggta 31599414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 25571667 - 25571808
Alignment:
Q  18 atctatttgatttctcttggagttggatagaatatttgta--ataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattt 115  Q
    |||||||| ||||||||||||| | |||||| ||||  ||  ||||| ||||||| | | ||| |||||||| ||||||| | |  ||||| | | ||||    
T  25571667 atctatttaatttctcttggagatagatagattattattattataacatggtatggtatgaaattaagtttggggttgctttttttaattaacgagattt 25571766  T
Q  116 taagtttggggtagggtactaagagaacttatttattaaaaa 157  Q
    |||||||||||| |||||| |  | ||||||||||| |||||    
T  25571767 taagtttggggtggggtaccagtaaaacttatttatcaaaaa 25571808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 401 - 536
Target Start/End: Original strand, 20337865 - 20338000
Alignment:
Q  401 gcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatgagcttgactgtcaatttaga 500  Q
    ||||||||||| |||||||||||||||||   ||||||||||||||||  ||||||| |||||||| |||||||||||||| ||||| |||   |||| |    
T  20337865 gcctactttctcaaatatatcccaccttaacttaagtcatgttataaccttgaaagacctcaaagtgtgtatatagtatgatcttgaatgtatgtttaaa 20337964  T
Q  501 atggtttcaaatttaaagcaaggtagattcatgtga 536  Q
    ||  ||||||||||| |||||| ||  |||||||||    
T  20337965 attatttcaaatttagagcaagatacgttcatgtga 20338000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 283 - 539
Target Start/End: Complemental strand, 4839534 - 4839278
Alignment:
Q  283 aaagataaatagttcttcttagtatccatcttgcttggtttaaggaagaaa-gatagatagtgctacaatttttagtaagaatcattaggttgataatat 381  Q
    ||||||||||||||||  ||| || |||||||| |||||||||||||| || | ||| |||| || |||| ||||||| ||| | | ||||||||||| |    
T  4839534 aaagataaatagttctatttaatacccatcttgtttggtttaaggaaggaatgttag-tagtacttcaatgtttagtaggaaacctcaggttgataatct 4839436  T
Q  382 aact-caagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatg 480  Q
    |||| ||||||  | ||||||||||||||  ||| |||||| |||||||  |||||  | ||||||||  |||||||||| | | | |||||||||||||    
T  4839435 aacttcaagttgttttgttagcctacttttctaa-tatatctcaccttaacctaagatacgttataaccttgaaagaactaatactttgtatatagtatg 4839337  T
Q  481 agcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacga 539  Q
    | ||||||||||  |||||| |  | ||||||||| | |||| || |||||||||||||    
T  4839336 atcttgactgtctgtttagagttctctcaaatttacatcaagatacattcatgtgacga 4839278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 20289651 - 20289763
Alignment:
Q  48 aatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtactaagagaacttat 147  Q
    ||||||| ||||||||||||||||||| |||||||||||||  || |||| ||||||||  |||||||||||||| |||| ||||||||  |||| ||||    
T  20289651 aatatttttaataacttggtatgatttgaaactaagtttgacatttctctttggaattaagaacattttaagttt-gggtggggtactagtagaatttat 20289749  T
Q  148 ttattaaaaatgaa 161  Q
    |||  |||||||||    
T  20289750 ttaacaaaaatgaa 20289763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 4839767 - 4839701
Alignment:
Q  16 tcatctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaa 82  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||| |||||||||||| |||||||    
T  4839767 tcatctatttgatttctcttggagttagatataatatttttaataatttggtatgatttgaaactaa 4839701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 396 - 542
Target Start/End: Complemental strand, 8766191 - 8766045
Alignment:
Q  396 tgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatgagcttgactgtcaat 495  Q
    |||||||||||||||  ||||||||||  |||||  |||||||| |||||||| || ||||  ||| |||| |||| ||| | |||  |||  ||||  |    
T  8766191 tgttagcctactttcccaaatatatccacccttaacctaagtcaagttataaccctcaaagtcctctaagtgtgtaaataatctgattttggttgtctgt 8766092  T
Q  496 ttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattg 542  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  8766091 ttagaattgtttcaaatttatagcaaggtacattcatgtgacgattg 8766045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 20337493 - 20337591
Alignment:
Q  16 tcatctatttgatttctcttggagttggatagaatatttgtaataacttggtatg---atttaaaactaagtttgaggttgctctatggaattagcaac 111  Q
    |||| |||||||||| |||| ||||| |||| ||||||| |||||||||||||||   |||| ||||||||||||| ||| |||| |||||||||||||    
T  20337493 tcatttatttgatttatcttagagttagataaaatatttttaataacttggtatgattatttgaaactaagtttgatgtttctctttggaattagcaac 20337591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 16226135 - 16226068
Alignment:
Q  66 gtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    ||||| ||||||| |||||||| ||||||||| |||||||| |||||||||||||||||||| |||||    
T  16226135 gtatggtttaaaaataagtttgtggttgctctttggaattaacaacattttaagtttggggtggggta 16226068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 396 - 554
Target Start/End: Complemental strand, 8145765 - 8145607
Alignment:
Q  396 tgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatgagcttgactgtcaat 495  Q
    |||||||||||||||| |||||||| |  ||||| | ||||||| |||||||| |||||||   |  |||| |||| ||| | |||  || ||||||  |    
T  8145765 tgttagcctactttctcaaatatattcacccttaatataagtcaagttataaccctgaaagtcttataagtgtgtaaataatctgattttaactgtctgt 8145666  T
Q  496 ttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    ||||||| |||||||||||| ||||||||| |||||||||| || || |||||| ||||    
T  8145665 ttagaattgtttcaaatttatagcaaggtacattcatgtgatgactggagtgggcaaat 8145607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 28313467 - 28313542
Alignment:
Q  59 taacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtac 134  Q
    |||||||||| | ||| |||||||||||||||||||| | ||||||||  |||||||||||||| |||| ||||||    
T  28313467 taacttggtaaggtttgaaactaagtttgaggttgctttttggaattaataacattttaagttttgggtggggtac 28313542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 539
Target Start/End: Original strand, 28325685 - 28325863
Alignment:
Q  362 aatcattaggttgataatataact-caagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaact 460  Q
    |||| ||||||||| ||| ||||| || |||| | |||||||||| ||||  |||||||||   | |||  | ||| |||| || ||| |||||||| ||    
T  28325685 aatctttaggttgacaatttaacttcacgttcttttgttagcctattttcccaaatatatcaaccattaacccaagccatgctacaaccctgaaagacct 28325784  T
Q  461 caaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacga 539  Q
    |||||| |||||||| | ||| ||||||| ||  ||| |||| || ||||||||| ||||||||| |||||||||||||    
T  28325785 caaagtgtgtatataatttgatcttgactttctctttcgaattgtctcaaatttacagcaaggtacattcatgtgacga 28325863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 13586390 - 13586333
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    |||||||||||| ||||||||| ||||||||| |||||| |||||||||||| |||||    
T  13586390 aaactaagtttggggttgctctttggaattagaaacattataagtttggggtggggta 13586333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 524
Target Start/End: Complemental strand, 8771065 - 8770937
Alignment:
Q  396 tgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatgagcttgactgtcaat 495  Q
    |||||||||||||||  ||||||||||  |||||  |||||||| |||||||| || |||   ||| |||| |||| ||| | |||  ||| ||||| ||    
T  8771065 tgttagcctactttcccaaatatatccacccttaacctaagtcaagttataaccctcaaaatcctctaagtgtgtaaatactctgattttggctgtctat 8770966  T
Q  496 ttagaatggtttcaaatttaaagcaaggt 524  Q
    ||||||| |||||||||||| ||||||||    
T  8770965 ttagaattgtttcaaatttatagcaaggt 8770937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 8146636 - 8146585
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    |||||||||||| ||||||||| ||||||||| |||||||| ||||||||||    
T  8146636 aaactaagtttggggttgctctttggaattagaaacatttttagtttggggt 8146585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 8771363 - 8771312
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    |||||||||||| ||||||| | | |||||||||||||||||||||||||||    
T  8771363 aaactaagtttggggttgctatgttgaattagcaacattttaagtttggggt 8771312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 19166598 - 19166665
Alignment:
Q  66 gtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    ||||| ||| ||||||||||||  ||| |||| || |||||||||||||||||||||||||| |||||    
T  19166598 gtatggtttgaaactaagtttggagttactctttgaaattagcaacattttaagtttggggtggggta 19166665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 495 - 566
Target Start/End: Original strand, 52935219 - 52935290
Alignment:
Q  495 tttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggaccaac 566  Q
    |||| ||| |||||||||||| ||||||||| ||||||||||||| || |||||| |||| ||| |||||||    
T  52935219 tttaaaattgtttcaaatttatagcaaggtacattcatgtgacgactggagtggggaaatgttgtgaccaac 52935290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 8766480 - 8766423
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    |||||||||||| ||||||| | | |||||||||||||||||| |||||||| |||||    
T  8766480 aaactaagtttggggttgctatgttgaattagcaacattttaaatttggggtggggta 8766423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 12770501 - 12770562
Alignment:
Q  66 gtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    ||||| ||| |||||||| ||| ||||||||| |||||||| |||||| |||||||||||||    
T  12770501 gtatggtttgaaactaagcttggggttgctctttggaattatcaacatcttaagtttggggt 12770562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 12676757 - 12676694
Alignment:
Q  72 tttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtacta 136  Q
    |||||||||||||||| ||||||| | ||||| || ||||||||||||||||||||  |||||||    
T  12676757 tttaaaactaagtttggggttgctgt-tggaactaccaacattttaagtttggggtgaggtacta 12676694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 34276108 - 34276160
Alignment:
Q  484 ttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtga 536  Q
    |||||||||  |||||||| |||||||||||| ||||||||| ||||||||||    
T  34276108 ttgactgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtga 34276160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 554
Target Start/End: Original strand, 12770876 - 12770935
Alignment:
Q  495 tttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    |||||||| |||||||||||| ||||||||| | ||||||||||| |  |||||||||||    
T  12770876 tttagaattgtttcaaatttatagcaaggtacactcatgtgacgactagagtgggaaaat 12770935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 14426812 - 14426867
Alignment:
Q  72 tttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    ||||||| ||||||||  |||||||| ||||||||| |||| ||||||||||||||    
T  14426812 tttaaaattaagtttggagttgctctttggaattaggaacaatttaagtttggggt 14426867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 8403096 - 8402992
Alignment:
Q  18 atctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacatttta 117  Q
    ||||||||||||||| |||||||| |||||| || | | |||| | ||  ||| ||| ||| |||||||||||||||||| | |||||||||| || |||    
T  8403096 atctatttgatttcttttggagtttgatagattagt-gaaata-cgtgtcatggtttgaaattaagtttgaggttgctctttagaattagcaaaatctta 8402999  T
Q  118 agtttgg 124  Q
    |||||||    
T  8402998 agtttgg 8402992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 19167025 - 19167095
Alignment:
Q  484 ttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    |||||||||  |||| ||| |||| ||||||| ||||||||| ||||||||||||| || |||||| ||||    
T  19167025 ttgactgtctgtttaaaattgtttgaaatttatagcaaggtacattcatgtgacgactggagtgggcaaat 19167095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 10951621 - 10951589
Alignment:
Q  396 tgttagcctactttcttaaatatatcccacctt 428  Q
    |||||||||||||||| ||||||||||||||||    
T  10951621 tgttagcctactttctcaaatatatcccacctt 10951589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 11520651 - 11520683
Alignment:
Q  396 tgttagcctactttcttaaatatatcccacctt 428  Q
    ||||||||||||||| |||||||||||||||||    
T  11520651 tgttagcctactttcctaaatatatcccacctt 11520683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 16115672 - 16115539
Alignment:
Q  23 tttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagttt 122  Q
    ||||||||||| ||||||| |||||| ||||  || | |||||||||||||| || ||||||||| | || |||| | ||||||| ||||||||||||||    
T  16115672 tttgatttctcatggagttagatagattattatta-tgacttggtatgatttgaagctaagtttgggattactcttttgaattagaaacattttaagttt 16115574  T
Q  123 ggggtagggtactaagagaacttatttattaaaaa 157  Q
    ||||| ||||||||  ||||||||||||| |||||    
T  16115573 ggggtggggtactagtagaacttatttataaaaaa 16115539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 353 - 554
Target Start/End: Complemental strand, 16115359 - 16115156
Alignment:
Q  353 tttagtaagaatcattaggttgataatataactcaa--gttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactc 450  Q
    ||||||| |||||  |||||||||||| |||||| |  |||  | |||||||||| |||   |||||||||   |||||  ||||| ||||||||||| |    
T  16115359 tttagtaggaatccctaggttgataatctaactccaaggtttctttgttagcctatttttccaaatatatctacccttaaactaagccatgttataaccc 16115260  T
Q  451 tgaaagaactcaaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtggga 550  Q
    | ||||  |||||||| ||||||||   |||  ||||||||| ||||||||| |||||||||||| ||||||||| ||| ||||||||| || |||||||    
T  16115259 ttaaagtcctcaaagtgtgtatataaattgattttgactgtctatttagaattgtttcaaatttatagcaaggtacattgatgtgacgactggagtggga 16115160  T
Q  551 aaat 554  Q
    ||||    
T  16115159 aaat 16115156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 17610630 - 17610717
Alignment:
Q  16 tcatctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaatta 106  Q
    ||||| ||| |||||||||||||||| |||||||||||||   |||||||||| | ||| ||||| |||||||||||||||| ||||||||    
T  17610630 tcatcgattcgatttctcttggagttagatagaatatttg---taacttggtaaggtttgaaactgagtttgaggttgctctttggaatta 17610717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 18828195 - 18828148
Alignment:
Q  72 tttaaaactaagtttgaggttgctctatggaattagcaacattttaag 119  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||    
T  18828195 tttaaaactaagtttggagttgctctttggaattagcaacattttaag 18828148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 11898527 - 11898584
Alignment:
Q  17 catctatttgatttctcttggagttggatagaatatttgtaataacttggtatgattt 74  Q
    |||||||||||||||| ||  |||| |||||||||||| ||| |||||||||||||||    
T  11898527 catctatttgatttcttttatagttagatagaatatttttaagaacttggtatgattt 11898584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 16259665 - 16259547
Alignment:
Q  16 tcatctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattt 115  Q
    ||||||||||||||  |||| ||||| |||| ||||||| ||| ||| |  || ||||| ||| |||||| || |||||||| ||| ||||| ||||||     
T  16259665 tcatctatttgatt--tctttgagttagataaaatatttttaagaacgttctaagatttgaaattaagttcgacgttgctctttggtattagaaacattc 16259568  T
Q  116 taagtttggggtagggtacta 136  Q
    |||||||||| | ||||||||    
T  16259567 taagtttgggattgggtacta 16259547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 23222696 - 23222771
Alignment:
Q  71 atttaaaactaagtttgagg-ttgctctatggaattagcaacattttaagtttggggtagggtactaagagaactt 145  Q
    |||| ||| ||||||| ||| ||||||| || |||||||||||||||||||||||||| | ||||||  |||||||    
T  23222696 atttgaaattaagtttaaggcttgctctttgaaattagcaacattttaagtttggggtggagtactagtagaactt 23222771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 25130592 - 25130539
Alignment:
Q  396 tgttagcctactttcttaaatatatcccacc-ttagtctaagtcatgttataac 448  Q
    |||||||||||||| | ||||||||| |||| ||||||| ||||||||||||||    
T  25130592 tgttagcctactttttaaaatatatctcacccttagtcttagtcatgttataac 25130539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 22525896 - 22526034
Alignment:
Q  18 atctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacatttta 117  Q
    |||||||||||||||||||||||| | |||| || || | || |||||||||  ||| || ||||||||| ||||| ||| |||||||||||||||||||    
T  22525896 atctatttgatttctcttggagttaggtaga-taattattatgacttggtatagtttgaagctaagtttggggttggtctttggaattagcaacatttta 22525994  T
Q  118 agtttggggtagggtactaagagaacttatttattaaaaa 157  Q
    |||||||| | || ||| |  ||||||||||||| |||||    
T  22525995 agtttgggatgggataccagtagaacttatttatcaaaaa 22526034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 28588346 - 28588482
Alignment:
Q  18 atctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacatttta 117  Q
    |||| |||||||||||||| ||||||||| ||  |||   ||||||||| ||| |||||| ||||||||||| ||||||| ||||||||  ||||| |||    
T  28588346 atctgtttgatttctcttgaagttggatataagtttt---ataacttggcatggtttaaagctaagtttgagattgctctttggaattatgaacatctta 28588442  T
Q  118 agtttggggtagggtactaagagaacttatttattaaaaa 157  Q
    |||||||||| || ||| |  ||||||||||||| |||||    
T  28588443 agtttggggtgggataccagtagaacttatttatcaaaaa 28588482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 8322160 - 8322270
Alignment:
Q  16 tcatctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattt 115  Q
    |||||||||| ||||||||| ||| | |||||||| ||| ||||||||| ||||||| | |||||||||||  |||| |||| ||||||||| ||||||     
T  8322160 tcatctatttaatttctcttagagctagatagaatttttttaataacttagtatgatatgaaactaagtttagggttactctttggaattagtaacattc 8322259  T
Q  116 taagtttgggg 126  Q
     ||||||||||    
T  8322260 caagtttgggg 8322270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 22570731 - 22570604
Alignment:
Q  23 tttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagttt 122  Q
    ||||||||||||||||||| ||||  |||||  || | |||  ||||| ||| ||  |||||||| ||||||||| |||||||||||||| |||||||||    
T  22570731 tttgatttctcttggagttagatatgatattatta-tgactcagtatgttttgaagataagtttgcggttgctctttggaattagcaacaatttaagttt 22570633  T
Q  123 ggggtagggtactaagagaacttatttat 151  Q
    ||||| |||||  |  |||||||||||||    
T  22570632 ggggtggggtaacagtagaacttatttat 22570604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 539
Target Start/End: Complemental strand, 22570370 - 22570217
Alignment:
Q  386 caagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatgagctt 485  Q
    ||||||| | |||||||||||||||  ||||||||||  | |||  ||||| || |||||||| || ||||  |||||||| |||||||| | | |   |    
T  22570370 caagttcttttgttagcctactttcccaaatatatccacctttaacctaaggcaagttataacgcttaaagtcctcaaagtgtgtatataatttaattgt 22570271  T
Q  486 gactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacga 539  Q
    ||||||| |||||||||  | ||||||| | ||||||||| |||||||||||||    
T  22570270 gactgtctatttagaattctctcaaattcacagcaaggtacattcatgtgacga 22570217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 12586270 - 12586391
Alignment:
Q  27 atttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaa--gtttgaggttgctctatggaattagcaacattttaagtttgg 124  Q
    |||||||| | |||| ||||||||  || |||||||||| |||||||| || ||||  |||||||||||| || ||||| || |||||| |||| |||||    
T  12586270 atttctctcgaagttagatagaatgattttaataacttgttatgatttgaagctaaaagtttgaggttgcactttggaaata-caacatcttaaatttgg 12586368  T
Q  125 ggtagggtactaagagaacttat 147  Q
    |||||| ||| || |||||||||    
T  12586369 ggtaggataccaatagaacttat 12586391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 495 - 556
Target Start/End: Complemental strand, 15552660 - 15552599
Alignment:
Q  495 tttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattt 556  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||| |  ||| |||||||||    
T  15552660 tttagaattgtttcaaatttatagcaaggtacattcatgtgacgactagagttggaaaattt 15552599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 21844994 - 21845051
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    |||||||||||| ||||||||| ||||||||||||||| | | ||||||||| |||||    
T  21844994 aaactaagtttggggttgctctttggaattagcaacatatcatgtttggggtggggta 21845051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 19742361 - 19742427
Alignment:
Q  61 acttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    ||||| |||| ||| ||| |||||||||| ||||||| |||||||| | |||| |||||||||||||    
T  19742361 acttgttatggtttgaaattaagtttgagattgctctttggaattacctacatcttaagtttggggt 19742427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 12490644 - 12490594
Alignment:
Q  79 ctaagtttgaggttgctctatggaattagcaacattttaagtttggggtaggg 131  Q
    |||||||||||||||||| |||| || |||||| |||||||||||||||||||    
T  12490644 ctaagtttgaggttgctc-atgggat-agcaactttttaagtttggggtaggg 12490594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 17860948 - 17860896
Alignment:
Q  396 tgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataac 448  Q
    |||||||||||||| | |||||||||||||||||  || ||||| ||||||||    
T  17860948 tgttagcctactttttcaaatatatcccaccttaacctcagtcacgttataac 17860896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 122555 - 122649
Alignment:
Q  58 ataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtactaagagaacttatttatt 152  Q
    |||||||  |||||||| |||||||||||||| || |||| || ||||| ||| |||||||||||||||| ||||||||  ||||||||||||||    
T  122555 ataacttactatgatttgaaactaagtttgagttttctctttgtaattaacaagattttaagtttggggtcgggtactactagaacttatttatt 122649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 444 - 554
Target Start/End: Original strand, 23009673 - 23009783
Alignment:
Q  444 ataactctgaaagaactcaaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattga 543  Q
    ||||| |||||||| |||||||||||||||||||   | |||||||| |  |||||||| || ||||||||| ||||||||| ||||||||||||| ||     
T  23009673 ataaccctgaaagacctcaaagtatgtatatagttaaatcttgactgactgtttagaattgtctcaaatttacagcaaggtacattcatgtgacgactgg 23009772  T
Q  544 agtgggaaaat 554  Q
    |||||| ||||    
T  23009773 agtgggcaaat 23009783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 354 - 554
Target Start/End: Complemental strand, 24526946 - 24526746
Alignment:
Q  354 ttagtaagaatcattaggttgataatataact-caagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctg 452  Q
    |||||| ||||| |||||||||||||  |||| ||||||  | ||||||||||||||  |||||||||||    |||   |||||||| ||| ||| |||    
T  24526946 ttagtaggaatccttaggttgataatcaaacttcaagtttctttgttagcctactttactaaatatatccactattaacgtaagtcatattacaaccctg 24526847  T
Q  453 aaagaactcaaagtatgtatatagtatgagcttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaa 552  Q
    ||||  |||||||| |||||||| | |||  |||| |||| ||||||||| || | ||||| | |||| |||| ||||||||||||| |||||||| |||    
T  24526846 aaagtcctcaaagtgtgtatataatctgattttgaatgtctatttagaattgtcttaaatt-acagcatggtacattcatgtgacgactgaagtggaaaa 24526748  T
Q  553 at 554  Q
    ||    
T  24526747 at 24526746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 386 - 618
Target Start/End: Complemental strand, 28918716 - 28918483
Alignment:
Q  386 caagttcatctgttagcctactttcttaaatatatcccaccttagtctaagtcatgttataactctgaaagaactcaaagtatgtatatagtatgagctt 485  Q
    ||||||| | |||||||||||||||  ||||||||||  |||||  ||| |||| ||||||||  | |||   ||| |||| |||| ||| |||||  ||    
T  28918716 caagttcttttgttagcctactttccaaaatatatccacccttaacctatgtcaagttataaccatcaaattcctctaagtgtgtaaataatatgatttt 28918617  T
Q  486 gactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaattttgggaccaac-atacagtatttaggagat 584  Q
     ||| ||  |||||||| |||||||||||| |||||| || ||||| ||||||| || |||||||||||   | ||||| |  ||| |  ||||||||||    
T  28918616 tactatctgtttagaattgtttcaaatttatagcaagatacattcacgtgacgactggagtgggaaaatgccgtgaccagctctactggctttaggagat 28918517  T
Q  585 acataagtgtatcttggaaaacagtgtggctgat 618  Q
    ||||| ||||||| ||||||| ||| ||||||||    
T  28918516 acatatgtgtatcctggaaaagagtatggctgat 28918483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 483 - 555
Target Start/End: Complemental strand, 25923034 - 25922962
Alignment:
Q  483 cttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaatt 555  Q
    ||||||||||  |||||||| |||||||||||| ||||||||| ||||||||||||| || |||||| |||||    
T  25923034 cttgactgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacgactggagtgggtaaatt 25922962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 25532669 - 25532613
Alignment:
Q  483 cttgactgtcaatttagaatggtttcaaatttaaagcaaggtagattcatgtgacga 539  Q
    ||||||||||  |||||||| |||||||||||| ||||||||| |||||||||||||    
T  25532669 cttgactgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacga 25532613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 9503834 - 9503893
Alignment:
Q  68 atgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    ||||||| ||| |||||||| ||||||||| ||||||||| ||||| |||||||||||||    
T  9503834 atgattttaaattaagtttgtggttgctctttggaattagtaacatcttaagtttggggt 9503893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 9515200 - 9515259
Alignment:
Q  68 atgatttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    ||||||| ||| |||||||| ||||||||| ||||||||| ||||| |||||||||||||    
T  9515200 atgattttaaattaagtttgtggttgctctttggaattagtaacatcttaagtttggggt 9515259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 28919016 - 28918959
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggta 133  Q
    ||||||||||||  |||||||| || ||||||||||| |||||||||||||| |||||    
T  28919016 aaactaagtttggagttgctctttgaaattagcaacaatttaagtttggggtggggta 28918959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 25923441 - 25923390
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggt 127  Q
    ||||||| |||| |||| |||| ||||||||||||||| |||||||||||||    
T  25923441 aaactaaatttggggttactctttggaattagcaacatcttaagtttggggt 25923390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 16815586 - 16815516
Alignment:
Q  80 taagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtactaagagaacttattta 150  Q
    |||||||| ||||||| | |||| ||| |||||||||||||||||| | |||||  || ||||||||||||    
T  16815586 taagtttggggttgctttttggatttaacaacattttaagtttgggatcgggtaacaatagaacttattta 16815516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 16854743 - 16854673
Alignment:
Q  80 taagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtactaagagaacttattta 150  Q
    |||||||| ||||||| | |||| ||| |||||||||||||||||| | |||||  || ||||||||||||    
T  16854743 taagtttggggttgctttttggatttaacaacattttaagtttgggatcgggtaacaatagaacttattta 16854673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 554
Target Start/End: Original strand, 25885884 - 25885934
Alignment:
Q  504 gtttcaaatttaaagcaaggtagattcatgtgacgattgaagtgggaaaat 554  Q
    |||||||||||| ||||||||| |||||||||| || || |||||||||||    
T  25885884 gtttcaaatttatagcaaggtacattcatgtgaagactggagtgggaaaat 25885934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 25533049 - 25533000
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggg 125  Q
    |||||||||||| ||||||||| || || ||||||||| |||||||||||    
T  25533049 aaactaagtttggggttgctctttgcaactagcaacatgttaagtttggg 25533000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 39068 - 38964
Alignment:
Q  16 tcatctatttgatttctcttggagttggatagaatatttgtaataacttggtatgatttaaaactaagtttgaggttgctctatggaattagcaacattt 115  Q
    |||||| ||| ||||||||||||||| |||||||||||| |||   |||||||| ||||  |||||| |||||||||||| | |  |||||||||||||     
T  39068 tcatcttttttatttctcttggagttagatagaatatttttaa---cttggtataatttgcaactaattttgaggttgctatttaaaattagcaacattc 38972  T
Q  116 taagtttg 123  Q
    ||||||||    
T  38971 taagtttg 38964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0718 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0718
Description:

Target: scaffold0718; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 1455 - 1518
Alignment:
Q  72 tttaaaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtacta 136  Q
    |||||||||||||||| ||||||| | | ||| |||||||||||||||||||||||  |||||||    
T  1455 tttaaaactaagtttggggttgctgt-tagaactagcaacattttaagtttggggtgaggtacta 1518  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 40342 - 40283
Alignment:
Q  76 aaactaagtttgaggttgctctatggaattagcaacattttaagtttggggtagggtacta 136  Q
    |||||| ||||| ||||||| | ||||| ||||||||||||||||||||||| ||||||||    
T  40342 aaactatgtttggggttgctgt-tggaactagcaacattttaagtttggggtggggtacta 40283  T

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Target: scaffold0990 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 2659 - 2714
Alignment:
Q  89 ggttgctctatggaattagcaacattttaagtttggggtagggtactaagagaactt 145  Q
    ||||| ||| || |||||||||||| |||||||||||| |||||||||| |||||||    
T  2659 ggttgttctttgaaattagcaacatcttaagtttgggg-agggtactaatagaactt 2714  T

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