View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19314_low_4 (Length: 407)
Name: NF19314_low_4
Description: NF19314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19314_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 35313546 - 35313930
Alignment:
| Q |
1 |
agagacaaaagtttcttcattcacatggattcaacagcaacttacgttcctttcattaa----aaattcacagaggtgcatgccctacaaaactaccaac |
96 |
Q |
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| T |
35313546 |
agagacaaaagtttcttcattcacatggattcaacagcaacttatgttccgttcattaatttaaaattcacagaggtgcatgccctacaaaactaccaac |
35313645 |
T |
|
| Q |
97 |
atgtttgtaagctctcaaatacaattcttatttcatctccttcaattgacatggcccattccttttaaacaatcagaatttgagctctccaattgacctt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
35313646 |
atgtttgtaagctctcaaatacaattcttatttcatctccttcaattaacatggcccattcgttttaaacaaacagaatttgagctctccaattgacctt |
35313745 |
T |
|
| Q |
197 |
caattgtataaattcgatagcaataaatattacacgtataacagagggcaacagtaaagcaccaccaatgaccaaaaccttta----tccctcattctta |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35313746 |
caattgtataaattcgatagcaataaatattacacgtataacagagggcaacagtaaagcaccaccaatgaccaaaacctttatccctccctcattctta |
35313845 |
T |
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| Q |
293 |
gtcactttcattc----acttggacaaacactgtgtggttggtaagacttgtattttgattgtttaaaactaaagtgagttaact |
373 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35313846 |
gtcactttcattcacttacttggacatacactgtgtggttggtaagacttgtattttgattgtttaaaactaaagtgagttaact |
35313930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 168 - 333
Target Start/End: Original strand, 45582844 - 45583019
Alignment:
| Q |
168 |
atcagaatttgagctctccaattgaccttcaattgtataaattcgatagcaataaatatt--------acacgtata--acagagggcaacagtaaagca |
257 |
Q |
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| T |
45582844 |
atcagaatttgagctcttcagttgaccttcaattgtataaattcgataacaataaatattggtctcctacatgtatataacagagggcaacagtaaagca |
45582943 |
T |
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| Q |
258 |
ccaccaatgaccaaaacctttatccctcattcttagtcactttcattcacttggacaaacactgtgtggttggtaa |
333 |
Q |
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||||||||||||||| || |||| |||||||||||||||||||||||||| |||||| | || ||| ||||||||| |
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| T |
45582944 |
ccaccaatgaccaaagccattatacctcattcttagtcactttcattcacatggacataaacagtgaggttggtaa |
45583019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 45176847 - 45176966
Alignment:
| Q |
1 |
agagacaaaagtttcttcattcacatggattcaacagcaacttacgttcctttcattaa----aaattcacagaggtgcatgccctacaaaactaccaac |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45176847 |
agagacaaaagtttcttcattcacatggattcaacagcaacttatgttcctttcattaatttaaaattcacagaggtgcatgccctacaaaactaccaac |
45176946 |
T |
|
| Q |
97 |
atgtttgtaagctctcaaat |
116 |
Q |
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|||||||||||||||||||| |
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| T |
45176947 |
atgtttgtaagctctcaaat |
45176966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 27430039 - 27429989
Alignment:
| Q |
9 |
aagtttcttcattcacatggattcaacagcaacttacgttcctttcattaa |
59 |
Q |
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|||||||||||||||||||||||||||| ||||| | |||||||||||||| |
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| T |
27430039 |
aagtttcttcattcacatggattcaacatcaactaatgttcctttcattaa |
27429989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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