View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19314_low_6 (Length: 365)
Name: NF19314_low_6
Description: NF19314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19314_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 11748160 - 11747825
Alignment:
| Q |
16 |
attactacataatcaatcttgtcatacttgtccaaatccaatggcttacatagaaaacactacttagtctacaaaattagccaaaagcatcatacaacca |
115 |
Q |
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| T |
11748160 |
attactacataatcaatcttctcatacttgtccaaatccaatggcttacatagaaaacactacttagtctacaaaattagccaaaagcatcatacaacca |
11748061 |
T |
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| Q |
116 |
gcactnnnnnnngggtgccaaaagaaagcttcattctaagaagctcatatcattgttagaaggaaaatccaacaagagttgcagtgcagtgtcagatgag |
215 |
Q |
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| T |
11748060 |
gcactaaaaaaagggtgcccaaagaaagcttcattctaagaagctcatatcattgttagaaggaaaatccaacaagagttgcagtgcagtgtcagatgag |
11747961 |
T |
|
| Q |
216 |
tcttcaagatcattagagcttgatgaatcatcataacctacatcaaatgacttgtagtttctccaatcaaaatcctccatcacattgcttgttgtagtag |
315 |
Q |
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| T |
11747960 |
tcttcaagatcattagagcttgatgaatcatcataacctacatcaaatgacttgtagtttctccattcaaaatcctccatcacattgcttgttgtagtag |
11747861 |
T |
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| Q |
316 |
taacagaaactgatccacatttgttattgttattac |
351 |
Q |
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| T |
11747860 |
taacagaaactgatccacatttgttattgttattac |
11747825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 28944334 - 28944428
Alignment:
| Q |
151 |
ctaagaagctcatatcattgttagaaggaaaatccaacaagagttgcagtgcagtgtcagatgagtctt-caagatcattagagcttgatgaatca |
245 |
Q |
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| T |
28944334 |
ctaagaaactcatgtcattgttcataggaaaatcaaacaagagctgcaaagcagtgtctgatgaatcttgcaag-tcattggagcttgatgaatca |
28944428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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